Pinned

1. RIVM-bioinformatics/AmpliGone RIVM-bioinformatics/AmpliGone Public

   A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

   Python 8

2. RIVM-bioinformatics/TrueConsense RIVM-bioinformatics/TrueConsense Public

   TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alig…

   Python 5 1

3. RIVM-bioinformatics/ViroConstrictor RIVM-bioinformatics/ViroConstrictor Public

   ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

   Python 5 2

4. RIVM-bioinformatics/SARS2seq RIVM-bioinformatics/SARS2seq Public

   SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

   Python 6

5. DennisSchmitz/Jovian_archive DennisSchmitz/Jovian_archive Public

   Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics a…

   Python 18 7