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'mock': update 'MockBcl2fastq2Exe' to populate Fastqs & handle index Fastqs #546

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merged 2 commits into from May 20, 2020
Merged

'mock': update 'MockBcl2fastq2Exe' to populate Fastqs & handle index Fastqs #546

merged 2 commits into from May 20, 2020

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pjbriggs
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PR updating the MockBcl2fastq2Exe class in the mock module:

  • Populates output Fastq files with a single read record, and
  • Handles the --create-fastq-for-index-read option of bcl2fastq2

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Needs the changes from fls-bioinformatics-core/genomics#160 to be pushed to master.

@pjbriggs pjbriggs merged commit 01986f4 into devel May 20, 2020
@pjbriggs pjbriggs deleted the MockBcl2fastqExe-handle-index-and-multiple-reads branch May 20, 2020 14:14
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