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Fix Python syntax for raising and capturing exceptions #101

Merged
merged 26 commits into from Jun 25, 2019
Merged

Fix Python syntax for raising and capturing exceptions #101

merged 26 commits into from Jun 25, 2019

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pjbriggs
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PR which fixes the old-style syntax for raising and capturing exceptions, to modernise the code base and bring it into line with Python 3.

@pjbriggs
ChIP-seq/make_macs2_xls.py: fix syntax for raising and capturing exce…
0be5ec9 
…ptions.
@pjbriggs
bcftbx/FASTQFile: fix syntax for raising exception.
3240e84
@pjbriggs
bcftbx/Spreadsheet: fix syntax for raising and capturing exceptions.
2d1bc32
@pjbriggs
bcftbx/Md5sum: fix syntax for raising and capturing exceptions.
30021cd
@pjbriggs
bcftbx/IlluminaData: fix syntax for raising exceptions.
9a0c339
@pjbriggs
bcftbx/qc/report: fix syntax for raising and capturing exceptions.
bcc9409
@pjbriggs
bcftbx/SolidData: fix syntax for raising exceptions.
350dd37
@pjbriggs
bcftbx/TabFile: fix syntax for raising exceptions.
d65c544
@pjbriggs
bcftbx/simple_xls.py: fix syntax for raising and capturing exceptions.
3767b7d
@pjbriggs
bcftbx/mock: fix syntax for raising exceptions.
1727f0b
@pjbriggs
bcftbx/utils: fix syntax for raising exceptions.
0965461
@pjbriggs
microarray/best_exons.py: fix syntax for raising exceptions.
0d29080
@pjbriggs
bcftbx/Experiment: fix syntax for capturing exceptions.
8ece868
@pjbriggs
bcftbx/JobRunner: fix syntax for capturing exceptions.
76eae27
@pjbriggs
bcftbx/SolidData: fix syntax for capturing exceptions.
7627065
@pjbriggs
bcftbx/TabFile: fix exception handling syntax in unit tests.
9887daf
@pjbriggs
NGS-general/manage_seqs.py: fix syntax for capturing exceptions.
b902ec2
@pjbriggs
QC-pipeline/qcreporter.py: : fix syntax for capturing exceptions.
f24f638
@pjbriggs
QC-pipeline/run_qc_pipeline.py: : fix syntax for capturing exceptions.
a60e343
@pjbriggs
RNA-seq/bowtie_mapping_stats.py: : fix syntax for capturing exceptions.
8bd84fc
@pjbriggs
bcftbx/Pipeline: : fix syntax for capturing exceptions.
a0323eb
@pjbriggs
illumina2cluster/analyse_illumina_run.py: : fix syntax for capturing …
47b9570 
…exceptions.
@pjbriggs
illumina2cluster/rsync_seq_data.py: : fix syntax for capturing except…
01d85c0 
…ions.
@pjbriggs
solid2cluster/analyse_solid_run.py: : fix syntax for capturing except…
917a14b 
…ions.
@pjbriggs
utils/cluster_load.py: : fix syntax for capturing exceptions.
c7d493b
@pjbriggs
utils/make_mock_solid_dir.py: : fix syntax for capturing exceptions.
3467d71
@pjbriggs pjbriggs merged commit b55bbe5 into devel Jun 25, 2019
@pjbriggs pjbriggs deleted the fix-syntax-for-exceptions branch June 26, 2019 08:05
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