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Fix broken --version options on 'make_macs_xls.py' & 'make_macs2_xls.py' #135

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merged 1 commit into from Sep 13, 2019
Merged

Fix broken --version options on 'make_macs_xls.py' & 'make_macs2_xls.py' #135

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7 changes: 4 additions & 3 deletions ChIP-seq/make_macs2_xls.py
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Expand Up @@ -51,7 +51,7 @@
# Module metadata
#######################################################################

__version__ = '0.6.2'
__version__ = '0.6.3'

#######################################################################
# Class definitions
Expand Down Expand Up @@ -1144,14 +1144,15 @@ def main(macs_file,xls_out,xls_format="xlsx",bed_out=None):

if __name__ == "__main__":
# Process command line
p = argparse.ArgumentParser(version="%(prog)s "+__version__,
description=
p = argparse.ArgumentParser(description=
"Create an XLS(X) spreadsheet from the output "
"of the MACS2 peak caller. MACS2_XLS is the "
"output '.xls' file from MACS2; if supplied "
"then XLS_OUT is the name to use for the output "
"file (otherwise it will be called "
"'XLS_<MACS2_XLS>.xls(x)').")
p.add_argument('--version',action='version',
version="%(prog)s "+__version__)
p.add_argument("-f","--format",
action="store",dest="xls_format",default="xlsx",
help="specify the output Excel spreadsheet format; must be "
Expand Down
5 changes: 3 additions & 2 deletions ChIP-seq/make_macs_xls.py
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Expand Up @@ -45,7 +45,7 @@
# Module metadata
#######################################################################

__version__ = '0.2.1'
__version__ = '0.2.2'

#######################################################################
# Class definitions
Expand All @@ -66,12 +66,13 @@
if __name__ == "__main__":
# Process command line
p = argparse.ArgumentParser(
version="%(prog)s "+__version__,
description=
"Create an XLS spreadsheet from the output of the MACS peak "
"caller. <MACS_OUTPUT> is the output '.xls' file from MACS; "
"if supplied then <XLS_OUT> is the name to use for the output "
"file, otherwise it will be called 'XLS_<MACS_OUTPUT>.xls'.")
p.add_argument('--version',action='version',
version="%(prog)s "+__version__)
p.add_argument('macs_in',metavar="MACS_OUTPUT",action='store',
help="output .xls file from MACS")
p.add_argument('xls_out',metavar="XLS_OUT",action='store',nargs='?',
Expand Down