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NGS-general: update utilities for Python2/3 compatibility #141

Merged
merged 9 commits into from Sep 13, 2019
Merged

NGS-general: update utilities for Python2/3 compatibility #141

merged 9 commits into from Sep 13, 2019

Commits on Sep 13, 2019

  1. NGS-general/manage_seqs.py: fix --version command line option (was br… 

    …oken under Python 3).
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  2. NGS-general/manage_seqs.py: explicitly cast dictionary keys to list f… 

    …or Python3 compatibility.
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  3. NGS-general/manage_seqs.py: bump version number.

    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  4. NGS-general/reorder_fasta.py: switch 'izip_longest' for Python2/3 com… 

    …patible 'zip_longest', and remove Python2-only 'cmp' built-in from 'cmp_chrom_names'.
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  5. NGS-general/sam2soap.py: switch Python 2-only 'xrange' to Python 2/3 … 

    …compatible 'range'.
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  6. NGS-general/split_fasta.py: fix --version command line option, which … 

    …was broken under Python3.
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  7. NGS-general/split_fasta.py: add __next__ method to FastaChromIterator… 

    … class for Python3.
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  8. NGS-general/split_fasta.py: bump version number.

    @pjbriggs
    pjbriggs committed Sep 13, 2019
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  9. NGS-general/split_fastq.py: fix mode for test gzip files in unit test… 

    …s, for Python3 compatibility.
    @pjbriggs
    pjbriggs committed Sep 13, 2019
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