Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

addition of ncbi_protein annotation module #49

Closed
wants to merge 12 commits into from
Closed

addition of ncbi_protein annotation module #49

wants to merge 12 commits into from

Commits on Jan 27, 2022

  1. trying to add ncbi_protein annotation module 

    This custom module get's as input a list of protein's NCBI accession from NCBI protein database and performs a blastp against these sequences.

In summary, given the protein accs provided, the pipeline will check if any  protein of the input genome is similar to them.
    @fmalmeida
    fmalmeida committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    fe9e841 View commit details
    Browse the repository at this point in the history

Commits on Jan 28, 2022

  1. adding example input for ncbi proteins annotation module

    @fmalmeida
    fmalmeida committed Jan 28, 2022
    Configuration menu
    Copy the full SHA
    0244411 View commit details
    Browse the repository at this point in the history

Commits on Feb 1, 2022

  1. fixing help message

    @fmalmeida
    fmalmeida committed Feb 1, 2022
    Configuration menu
    Copy the full SHA
    d1b300c View commit details
    Browse the repository at this point in the history

  2. making MGE thresholds parameter simpler

    @fmalmeida
    fmalmeida committed Feb 1, 2022
    Configuration menu
    Copy the full SHA
    f98b1e8 View commit details
    Browse the repository at this point in the history

Commits on Feb 2, 2022

  1. adding ncbi protein info in manual page

    @fmalmeida
    fmalmeida committed Feb 2, 2022
    Configuration menu
    Copy the full SHA
    f21a448 View commit details
    Browse the repository at this point in the history

  2. adding information in custom dbs page

    @fmalmeida
    fmalmeida committed Feb 2, 2022
    Configuration menu
    Copy the full SHA
    6b53f92 View commit details
    Browse the repository at this point in the history

Commits on Feb 3, 2022

  1. trying to collapse annotation of custom dbs

    @fmalmeida
    fmalmeida committed Feb 3, 2022
    Configuration menu
    Copy the full SHA
    4022866 View commit details
    Browse the repository at this point in the history

  2. adding prefix information tp ncbi prot module

    @fmalmeida
    fmalmeida committed Feb 3, 2022
    Configuration menu
    Copy the full SHA
    b1d5fa6 View commit details
    Browse the repository at this point in the history

  3. adding indentation

    @fmalmeida
    fmalmeida committed Feb 3, 2022
    Configuration menu
    Copy the full SHA
    dc00ec0 View commit details
    Browse the repository at this point in the history

  4. fixing custom blast module?

    @fmalmeida
    fmalmeida committed Feb 3, 2022
    Configuration menu
    Copy the full SHA
    ed58bae View commit details
    Browse the repository at this point in the history

Commits on Feb 4, 2022

  1. modules of custom annotations now working

    @fmalmeida
    fmalmeida committed Feb 4, 2022
    Configuration menu
    Copy the full SHA
    cabc411 View commit details
    Browse the repository at this point in the history

Commits on Feb 14, 2022

  1. saving work in progress so it can be copied to the remodelling branch

    @fmalmeida
    fmalmeida committed Feb 14, 2022
    Configuration menu
    Copy the full SHA
    b812901 View commit details
    Browse the repository at this point in the history