Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge changes from jwst-kpi xara version #6

Draft
wants to merge 56 commits into
base: master
Choose a base branch
from
Draft

Merge changes from jwst-kpi xara version #6

wants to merge 56 commits into from

Commits on Mar 9, 2022

  1. Adding skeleton for KPI3Pipeline and draft NIRISS pupil model

    Jens Kammerer committed Mar 9, 2022
    Configuration menu
    Copy the full SHA
    2e12410 View commit details
    Browse the repository at this point in the history

Commits on Mar 30, 2022

  1. First functional version of KPI3Pipeline for NIRCam and NIRISS

    Jens Kammerer committed Mar 30, 2022
    Configuration menu
    Copy the full SHA
    dc04797 View commit details
    Browse the repository at this point in the history

Commits on Apr 7, 2022

  1. Save output as KPFITS file and shift in complex visibility space

    Jens Kammerer committed Apr 7, 2022
    Configuration menu
    Copy the full SHA
    1ff1048 View commit details
    Browse the repository at this point in the history

Commits on Apr 22, 2022

  1. Adding tutorial notebook, empirical uncertainties step, and CLEARP pu… 

    …pil model
    Jens Kammerer committed Apr 22, 2022
    Configuration menu
    Copy the full SHA
    5741b01 View commit details
    Browse the repository at this point in the history

  2. Fixing bugs with tutorial notebook

    Jens Kammerer committed Apr 22, 2022
    Configuration menu
    Copy the full SHA
    3e88125 View commit details
    Browse the repository at this point in the history

Commits on Apr 29, 2022

  1. Update CLEAR and CLEARP masks 

    CLEAR is generated with `WebbPrimaryAperture` (with mag=10 for
consistency with CLEARP) instead of `MASKCLEAR.fits` and CLEARP now has
consistent alignment between primary and secondary. Thanks to Rachel Cooper
(@rcooper295) for the scripts used to genreate these masks.
    @vandalt
    vandalt committed Apr 29, 2022
    Configuration menu
    Copy the full SHA
    c1a2ea7 View commit details
    Browse the repository at this point in the history

  2. Merge pull request fmartinache#2 from vandalt/calwebb-masks 

    Update CLEAR and CLEARP masks FITS files
    @kammerje
    kammerje committed Apr 29, 2022
    Configuration menu
    Copy the full SHA
    a427d37 View commit details
    Browse the repository at this point in the history

Commits on May 10, 2022

  1. Fix integer pixel recentering

    Jens Kammerer committed May 10, 2022
    Configuration menu
    Copy the full SHA
    fab27d4 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'develop' of https://github.com/kammerje/xara into develop

    Jens Kammerer committed May 10, 2022
    Configuration menu
    Copy the full SHA
    ee463ef View commit details
    Browse the repository at this point in the history

Commits on May 22, 2022

  1. Basic formatting changes

    @vandalt
    vandalt committed May 22, 2022
    Configuration menu
    Copy the full SHA
    560da3b View commit details
    Browse the repository at this point in the history

  2. Refactor block to open fits in function

    @vandalt
    vandalt committed May 22, 2022
    Configuration menu
    Copy the full SHA
    eb8da42 View commit details
    Browse the repository at this point in the history

  3. Refactor code to load data into separate function

    @vandalt
    vandalt committed May 22, 2022
    Configuration menu
    Copy the full SHA
    20c2aaf View commit details
    Browse the repository at this point in the history

  4. Use separate function to get output basename

    @vandalt
    vandalt committed May 22, 2022
    Configuration menu
    Copy the full SHA
    44aed86 View commit details
    Browse the repository at this point in the history

  5. Full Python .gitignore

    @vandalt
    vandalt committed May 22, 2022
    Configuration menu
    Copy the full SHA
    7f1c613 View commit details
    Browse the repository at this point in the history

Commits on May 23, 2022

  1. Add user-accessible option to show plots

    @vandalt
    vandalt committed May 23, 2022
    Configuration menu
    Copy the full SHA
    06c3dc6 View commit details
    Browse the repository at this point in the history

  2. Add option to crop NIRISS data

    @vandalt
    vandalt committed May 23, 2022
    Configuration menu
    Copy the full SHA
    ce23cb0 View commit details
    Browse the repository at this point in the history

  3. Formatting (blank lines) in utils file

    @vandalt
    vandalt committed May 23, 2022
    Configuration menu
    Copy the full SHA
    c017c41 View commit details
    Browse the repository at this point in the history

  4. Merge pull request fmartinache#5 from vandalt/calwebb-fmt 

    Formatting and file I/O updates
    @kammerje
    kammerje committed May 23, 2022
    Configuration menu
    Copy the full SHA
    3533b3c View commit details
    Browse the repository at this point in the history

  5. Merge pull request fmartinache#6 from vandalt/calwebb-plotting 

    Add more control over plotting
    @kammerje
    kammerje committed May 23, 2022
    Configuration menu
    Copy the full SHA
    0ea2d20 View commit details
    Browse the repository at this point in the history

  6. Merge pull request #7 from vandalt/calwebb-crop 

    Add option to crop NIRISS data
    @kammerje
    kammerje committed May 23, 2022
    Configuration menu
    Copy the full SHA
    2bddc78 View commit details
    Browse the repository at this point in the history

Commits on May 24, 2022

  1. Include pupil models

    @vandalt
    vandalt committed May 24, 2022
    Configuration menu
    Copy the full SHA
    d39e8fc View commit details
    Browse the repository at this point in the history

  2. Fallback to local repo for local install pupil models

    @vandalt
    vandalt committed May 24, 2022
    Configuration menu
    Copy the full SHA
    335e42f View commit details
    Browse the repository at this point in the history

  3. Merge pull request #10 from vandalt/fix-pupil-import 

    Include pupil models even if not locally installed
    @kammerje
    kammerje committed May 24, 2022
    Configuration menu
    Copy the full SHA
    bbc133c View commit details
    Browse the repository at this point in the history

  4. Dirty fix for issue with pupil rotation

    Jens Kammerer committed May 24, 2022
    Configuration menu
    Copy the full SHA
    eca7f56 View commit details
    Browse the repository at this point in the history

Commits on May 25, 2022

  1. Allow user to specify pupil model path

    Jens Kammerer committed May 25, 2022
    Configuration menu
    Copy the full SHA
    c456dcb View commit details
    Browse the repository at this point in the history

Commits on Jun 10, 2022

  1. Add hexagonal pupil models

    Jens Kammerer committed Jun 10, 2022
    Configuration menu
    Copy the full SHA
    dd77d0f View commit details
    Browse the repository at this point in the history

Commits on Aug 4, 2022

  1. Remove pipeline files

    @vandalt
    vandalt committed Aug 4, 2022
    Configuration menu
    Copy the full SHA
    3cc3204 View commit details
    Browse the repository at this point in the history

  2. Remove jwst directory with pupil models

    @vandalt
    vandalt committed Aug 4, 2022
    Configuration menu
    Copy the full SHA
    506d059 View commit details
    Browse the repository at this point in the history

  3. Remove example JWST notebook

    @vandalt
    vandalt committed Aug 4, 2022
    Configuration menu
    Copy the full SHA
    d0348d3 View commit details
    Browse the repository at this point in the history

  4. Remove JWST data files from setup

    @vandalt
    vandalt committed Aug 4, 2022
    Configuration menu
    Copy the full SHA
    571bd88 View commit details
    Browse the repository at this point in the history

  5. Add hexagon function from opticstools

    @vandalt
    vandalt committed Aug 4, 2022
    Configuration menu
    Copy the full SHA
    c441faf View commit details
    Browse the repository at this point in the history

Commits on Aug 5, 2022

  1. Merge pull request #12 from vandalt/calwebb-kpi-ignore 

    Add standard Python `.gitignore`
    @kammerje
    kammerje committed Aug 5, 2022
    Configuration menu
    Copy the full SHA
    247a7ca View commit details
    Browse the repository at this point in the history

  2. Merge pull request #13 from vandalt/calwebb-nopipeline 

    Remove JWST Pipeline code
    @kammerje
    kammerje committed Aug 5, 2022
    Configuration menu
    Copy the full SHA
    c0c172b View commit details
    Browse the repository at this point in the history

  3. np.float -> float

    @vandalt
    vandalt committed Aug 5, 2022
    Configuration menu
    Copy the full SHA
    1572d8e View commit details
    Browse the repository at this point in the history

Commits on Sep 8, 2022

  1. Update docstrings for new args following calwebb updates

    @vandalt
    vandalt committed Sep 8, 2022
    Configuration menu
    Copy the full SHA
    5603587 View commit details
    Browse the repository at this point in the history

  2. Use xara defaults for plots 

    To avoid introducing changes that are not necessary to new functionality
    @vandalt
    vandalt committed Sep 8, 2022
    Configuration menu
    Copy the full SHA
    6cee2c0 View commit details
    Browse the repository at this point in the history

  3. If statement formatting 

    Remove parenthesis and do not compare booleans, following PEP 8
    @vandalt
    vandalt committed Sep 8, 2022
    Configuration menu
    Copy the full SHA
    ff4f3af View commit details
    Browse the repository at this point in the history

  4. If statement formatting 

    Remove parenthesis and do not compare booleans, following PEP 8
    @vandalt
    vandalt committed Sep 8, 2022
    Configuration menu
    Copy the full SHA
    4f0c90b View commit details
    Browse the repository at this point in the history

  5. Make integer-pixel recentering independent of sgmask

    @vandalt
    vandalt committed Sep 8, 2022
    Configuration menu
    Copy the full SHA
    b3ddfba View commit details
    Browse the repository at this point in the history

  6. Fix normalization when setting is false

    @katherinethibault
    katherinethibault committed Sep 8, 2022
    Configuration menu
    Copy the full SHA
    4206e9f View commit details
    Browse the repository at this point in the history

Commits on Sep 12, 2022

  1. Merge pull request #14 from vandalt/fix-np-float 

    np.float -> float
    @kammerje
    kammerje committed Sep 12, 2022
    Configuration menu
    Copy the full SHA
    2c7f7d8 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #15 from vandalt/document-xara 

    Document changes to xara core for calwebb functionality
    @kammerje
    kammerje committed Sep 12, 2022
    Configuration menu
    Copy the full SHA
    8796205 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #16 from vandalt/update-recenter 

    Make integer-pixel recentering independent of sgmask
    @kammerje
    kammerje committed Sep 12, 2022
    Configuration menu
    Copy the full SHA
    97ee2aa View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2022

  1. Merge remote-tracking branch 'upstream/master' into test-merge-master

    @vandalt
    vandalt committed Sep 19, 2022
    Configuration menu
    Copy the full SHA
    d7d0ffc View commit details
    Browse the repository at this point in the history

  2. Go back to xymax=None (more generic)

    @vandalt
    vandalt committed Sep 19, 2022
    Configuration menu
    Copy the full SHA
    de79a34 View commit details
    Browse the repository at this point in the history

  3. Merge remote-tracking branch 'katherine/Issue#2' into test-merge-master

    @vandalt
    vandalt committed Sep 19, 2022
    Configuration menu
    Copy the full SHA
    ca2626b View commit details
    Browse the repository at this point in the history

Commits on Sep 27, 2022

  1. Merge pull request #18 from vandalt/test-merge-master 

    Merge Changes from main xara branch
    @kammerje
    kammerje committed Sep 27, 2022
    Configuration menu
    Copy the full SHA
    64dc621 View commit details
    Browse the repository at this point in the history

Commits on Nov 2, 2022

  1. Put back Kpi3Pipeline

    Jens Kammerer committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    00efbb4 View commit details
    Browse the repository at this point in the history

Commits on Jan 31, 2023

  1. Use hexagon function from core (fix import error) 

    Before, hexagon was imported from opticstools. Now copied into xara for
convenience (easier installation, no additional dependency).
    @vandalt
    vandalt committed Jan 31, 2023
    Configuration menu
    Copy the full SHA
    79961cd View commit details
    Browse the repository at this point in the history

  2. Remove deprecated np.float in favor of built-in float

    @vandalt
    vandalt committed Jan 31, 2023
    Configuration menu
    Copy the full SHA
    77ee9fa View commit details
    Browse the repository at this point in the history

  3. use == instead of is for string comparison 

    Python shows a warning otherwise (and it's less safe)
    @vandalt
    vandalt committed Jan 31, 2023
    Configuration menu
    Copy the full SHA
    d64f483 View commit details
    Browse the repository at this point in the history

Commits on Feb 3, 2023

  1. Merge pull request #19 from vandalt/reapply 

    Reapply old changes that got overwritten
    @kammerje
    kammerje committed Feb 3, 2023
    Configuration menu
    Copy the full SHA
    ead7827 View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2023

  1. Remove calwebb-kpi leftover files

    @vandalt
    vandalt committed Jul 12, 2023
    Configuration menu
    Copy the full SHA
    f8f0f0d View commit details
    Browse the repository at this point in the history

  2. Formatting

    @vandalt
    vandalt committed Jul 12, 2023
    Configuration menu
    Copy the full SHA
    23cc8ff View commit details
    Browse the repository at this point in the history

  3. Use self.KPM instead of old alias self.KerPhi when creating KPM HDU

    @vandalt
    vandalt committed Jul 12, 2023
    Configuration menu
    Copy the full SHA
    2716c14 View commit details
    Browse the repository at this point in the history

  4. Disable pyright type checking 

    Xara has no types sets and pyright is common tool for vscode, does not hurt to keep this here I guess
    @vandalt
    vandalt committed Jul 12, 2023
    Configuration menu
    Copy the full SHA
    ecdb354 View commit details
    Browse the repository at this point in the history