Don't display peptide workflow-specific parameters in PD proteins set…

…tings table
fmicompbio · May 2, 2024 · 6c925cf · 6c925cf
1 parent 64b9f45
commit 6c925cf
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/inst/extdata/process_basic_template.Rmd b/inst/extdata/process_basic_template.Rmd
@@ -250,7 +250,10 @@ if (expType == "ProteomeDiscoverer") {
     if (inputLevel == "Proteins") {
         settingsList <- settingsList[!(names(settingsList) %in% 
                                            c("Min. number of PSMs",
-                                             "Min. delta score"))]
+                                             "Min. delta score", 
+                                             "Modifications column", 
+                                             "Exclude unmodified peptides",
+                                             "Modifications to keep"))]
     }
     if (inputLevel == "PeptideGroups") {
         settingsList <- settingsList[!(names(settingsList) %in%