fixed return status due incorrect input files

fo40225 · Jun 30, 2021 · 966cd1e · 966cd1e
1 parent ea837d1
commit 966cd1e
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Showing 2 changed files with 15 additions and 13 deletions.
diff --git a/src/fastmap.cpp b/src/fastmap.cpp
@@ -896,7 +896,7 @@ int main_mem(int argc, char *argv[])
         if (is_o) 
             fclose(aux.fp);
         delete aux.fmi;
-        kclose(ko);
+        // kclose(ko);
         return 1;
     }
     // fp = gzopen(argv[optind + 1], "r");
@@ -924,7 +924,7 @@ int main_mem(int argc, char *argv[])
                     fclose(aux.fp);             
                 delete aux.fmi;
                 kclose(ko);
-                kclose(ko2);
+                // kclose(ko2);
                 return 1;
             }            
             // fp2 = gzopen(argv[optind + 2], "r");

diff --git a/src/main.cpp b/src/main.cpp
@@ -111,16 +111,18 @@ int main(int argc, char* argv[])
         fprintf(stderr, "ERROR: unknown command '%s'\n", argv[1]);
         return 1;
     }
-
-    fprintf(stderr, "\nImportant parameter settings: \n");
-    fprintf(stderr, "\tBATCH_SIZE: %d\n", BATCH_SIZE);
-    fprintf(stderr, "\tMAX_SEQ_LEN_REF: %d\n", MAX_SEQ_LEN_REF);
-    fprintf(stderr, "\tMAX_SEQ_LEN_QER: %d\n", MAX_SEQ_LEN_QER);
-    fprintf(stderr, "\tMAX_SEQ_LEN8: %d\n", MAX_SEQ_LEN8);
-    fprintf(stderr, "\tSEEDS_PER_READ: %d\n", SEEDS_PER_READ);
-    fprintf(stderr, "\tSIMD_WIDTH8 X: %d\n", SIMD_WIDTH8);
-    fprintf(stderr, "\tSIMD_WIDTH16 X: %d\n", SIMD_WIDTH16);
-    fprintf(stderr, "\tAVG_SEEDS_PER_READ: %d\n", AVG_SEEDS_PER_READ);
+
+    if (ret == 0) {
+        fprintf(stderr, "\nImportant parameter settings: \n");
+        fprintf(stderr, "\tBATCH_SIZE: %d\n", BATCH_SIZE);
+        fprintf(stderr, "\tMAX_SEQ_LEN_REF: %d\n", MAX_SEQ_LEN_REF);
+        fprintf(stderr, "\tMAX_SEQ_LEN_QER: %d\n", MAX_SEQ_LEN_QER);
+        fprintf(stderr, "\tMAX_SEQ_LEN8: %d\n", MAX_SEQ_LEN8);
+        fprintf(stderr, "\tSEEDS_PER_READ: %d\n", SEEDS_PER_READ);
+        fprintf(stderr, "\tSIMD_WIDTH8 X: %d\n", SIMD_WIDTH8);
+        fprintf(stderr, "\tSIMD_WIDTH16 X: %d\n", SIMD_WIDTH16);
+        fprintf(stderr, "\tAVG_SEEDS_PER_READ: %d\n", AVG_SEEDS_PER_READ);
+    }
 
-    return 0;
+    return ret;
 }