Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
Blast2id_NCBI.py		Blast2id_NCBI.py
CLC_SNP_contig_extract.py		CLC_SNP_contig_extract.py
GO_format.py		GO_format.py
README.md		README.md
VCF_parser-assembled_genes.py		VCF_parser-assembled_genes.py
VCF_parser-assembled_genes_with_cov-info.py		VCF_parser-assembled_genes_with_cov-info.py
VCF_parser.py		VCF_parser.py
ace_extract_contigs.py		ace_extract_contigs.py
ave.read-length.sh		ave.read-length.sh
bayescan_format.py		bayescan_format.py
bayescan_list_to_discard.py		bayescan_list_to_discard.py
blast_parse_for_best_scores.py		blast_parse_for_best_scores.py
blastp_parser_inclusive.py		blastp_parser_inclusive.py
blastplus2id.py		blastplus2id.py
change_name_SNP.py		change_name_SNP.py
complete_contig_info.py		complete_contig_info.py
concatenate_scores_for_R_graph.py		concatenate_scores_for_R_graph.py
contig_length.py		contig_length.py
contigs_to_genes.py		contigs_to_genes.py
correct_fastq.py		correct_fastq.py
correct_fastq_454.py		correct_fastq_454.py
coverage.per-contig.py		coverage.per-contig.py
cumulative_base_frequency.py		cumulative_base_frequency.py
decompte_SNP_par_contig.py		decompte_SNP_par_contig.py
dnasp_input.py		dnasp_input.py
dnasp_input_format.py		dnasp_input_format.py
eliminate_full_hetero_SNP.py		eliminate_full_hetero_SNP.py
eliminate_reads.py		eliminate_reads.py
erase_enters.py		erase_enters.py
erase_no_hits.py		erase_no_hits.py
erase_reads_from_qual.py		erase_reads_from_qual.py
exon-introns_breaks.py		exon-introns_breaks.py
extract_best_blast_scores.py		extract_best_blast_scores.py
extract_contigs_FASTA.py		extract_contigs_FASTA.py
extract_contigs_above_length.py		extract_contigs_above_length.py
extract_contigs_wrong.py		extract_contigs_wrong.py
extract_fasta_except_names.py		extract_fasta_except_names.py
extract_good_coverage.py		extract_good_coverage.py
extract_mimicry_k-mers.py		extract_mimicry_k-mers.py
extract_read.py		extract_read.py
extract_with_names.py		extract_with_names.py
fast_qual_to_fastq.py		fast_qual_to_fastq.py
fasta_change_name.py		fasta_change_name.py
fasta_eliminate_tabs_in_names.py		fasta_eliminate_tabs_in_names.py
fasta_median.py		fasta_median.py
fasta_to_tab.py		fasta_to_tab.py
find_SNP_alleles.py		find_SNP_alleles.py
find_host_specific_prot_alt-pipeline.py		find_host_specific_prot_alt-pipeline.py
find_redondant_contigs.py		find_redondant_contigs.py
fragmente_sfastq.py		fragmente_sfastq.py
fst_estimate.py		fst_estimate.py
genepop_format.py		genepop_format.py
genotype_snp.py		genotype_snp.py
get_Ho_outliers.py		get_Ho_outliers.py
gff2_to_gff3.py		gff2_to_gff3.py
gff_parser.py		gff_parser.py
gff_parser_extract_genes.py		gff_parser_extract_genes.py
heterozygosity-coverage_per_pop.py		heterozygosity-coverage_per_pop.py
heterozygosity_per_pop.py		heterozygosity_per_pop.py
histogram_format.py		histogram_format.py
input_format_LD-R.py		input_format_LD-R.py
intron-exon_from-blastplus.py		intron-exon_from-blastplus.py
intron-exon_from-blastx.py		intron-exon_from-blastx.py
intron_exon_orfs.py		intron_exon_orfs.py
k-mers_discard_conserved.py		k-mers_discard_conserved.py
k-mers_extract_mimicry.py		k-mers_extract_mimicry.py
k_mer_generator.py		k_mer_generator.py
lower_to_upper.py		lower_to_upper.py
merge.annotation.DGE-table.py		merge.annotation.DGE-table.py
mimicry_discard_conserved_prot.py		mimicry_discard_conserved_prot.py
mount_sshfs.py		mount_sshfs.py
orf_selection.py		orf_selection.py
parse_CLC_SNP_table.py		parse_CLC_SNP_table.py
parse_bayescan_file.py		parse_bayescan_file.py
parse_test.py		parse_test.py
percent_reads_job.sh		percent_reads_job.sh
percent_reads_mapped.sh		percent_reads_mapped.sh
percentage_targets-lght_covered_by-contigs.py		percentage_targets-lght_covered_by-contigs.py
phobius_output_parser.py		phobius_output_parser.py
phobius_short-output_parser.py		phobius_short-output_parser.py
proportion_coding_SNPs.py		proportion_coding_SNPs.py
proportion_coding_SNPs_with-genes.py		proportion_coding_SNPs_with-genes.py
qual_change_name.py		qual_change_name.py
read_lgth_fasta.py		read_lgth_fasta.py
rename (copy).sh		rename (copy).sh
rename.sh		rename.sh
rename_reads_sfastq_illumina.py		rename_reads_sfastq_illumina.py
repbase_parse.py		repbase_parse.py
snp_complete_info.py		snp_complete_info.py
snps-geno_to_bayescan.py		snps-geno_to_bayescan.py
snps-geno_to_bayescan_assembled_genes.py		snps-geno_to_bayescan_assembled_genes.py
split.fasta.py		split.fasta.py
split_fasta.py		split_fasta.py
split_fastq_files.py		split_fastq_files.py
standardize_gene_names.py		standardize_gene_names.py
transpose.py		transpose.py
uniprot_file_parser.py		uniprot_file_parser.py
update_my_scripts.sh		update_my_scripts.sh
verify_presence_name.py		verify_presence_name.py

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