Hands-on ChIP-Seq Analysis Workshop for Feng Lab Group meeting by Wayne Decatur
3:30am-5:20pm, May 14th, 2015.
This is the 3rd session in series; see first and second session info here
.. toctree:: :maxdepth: 2 getting_started connecting_windows connecting_all_others overview condensed initial steps for today genome of interest data acquisition Get a ChIP-Seq dataset Process the reads based on barcode Map the reads Improve the mapping of the reads Preliminary view of mappings Peak calling with MACS Relation to genomic features using CEAS Compare to published data Filter additional regions Motif discovery with MEME sources going forward support_docs_follow downloading_and_uploadingEC2 Making Wiggle file Covering Genome telomere_bed technical_guide_to_software mac_readying instance_readying