Segfault with CSV, SQLite, tables (M1) #1842
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danvinci
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I tried using Julia 1.7.1 (x86) and none of the above takes place, runs smoothly 👍 |
danvinci
changed the title
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Thanks for the issue! Segfaults are a bug of Julia itself, so we should report it to Julia's issues. The smaller the example can get, the better. For example, we might be able to take Pluto out of the equation by running the notebook in Julia directly, without Pluto. Does that still produce the segfault? |
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This might be fixed by JuliaLang/julia#43664 . Can you try building Julia from |
fonsp
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An update on this:
Tried each x2. As for building Julia from master, I just used 'make' and I assume it has been compiled for ARM. |
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It looks like this will be fixed by Julia 1.8, which will be released in a couple of months. Until then, we recommend using Julia x86! The M1 build is still too experimental. Thanks for opening the issue and for the useful testing!! Let us know if something comes up again! |
pankgeorg
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Feb 8, 2022
> Try this release in your browser! _(Available 30 minutes after the release)_ > > <a href="https://binder.plutojl.org/v0.18.0/"><img alt="Binder logo" src="https://mybinder.org/badge_logo.svg"></a> **Generate your own binder links using [pluto-on-binder.glitch.me](https://pluto-on-binder.glitch.me/)!** [Diff since v0.17.7](v0.17.7...v0.18.0) **Merged pull requests:** - Make document currentscript work (#1765) (@dralletje) - don't count logs messages multiple times for pluto-logs width (#1843) (@Pangoraw) - Pattern matching system for lezer code (#1849) (@dralletje) - minor fix: Tables integration caused method ambiguation for Union{}[] (#1851) (@16bitmood) - Fix #1852, relocatable changes for sysimage usage. (#1853) (@MichaelHatherly) - Re-enable parseMixed (#1855) (@pankgeorg) - DOI in REAMDE for citation (#1864) (@rikhuijzer) - Use pkgdir instead of pathof (#1867) (@rikhuijzer) - Hide banner in CI (#1868) (@rikhuijzer) - Server-side events as configuration (#1871) (@ctrekker) - fix is_stdlib() for nightly and enable nightly tests (#1874) (@Pangoraw) - Awesome! Line wrapping! (#1876) (@dralletje) - respect maxlog keyword for logs, fixes #1858 (#1877) (@Pangoraw) - allow .. as an identifier, fixes #1875 (#1878) (@Pangoraw) - Server start event (#1882) (@ctrekker) - Julia 1.6 minimum (#1885) (@fonsp) - New heuristic to skip intermediate bond values (#1892) (@fonsp) - Send queued bond changes when last script finishes (#1898) (@fonsp) **Closed issues:** - Pkg.jl will corrupt itself on Windows (#671) - Failure creating JuMP DenseAxisArray (#806) - Frontend tests fail too often (#1234) - Open multiple notebooks at start and without browser (#1278) - Segmentation faults on Julia 1.7 M1 (#1722) - Table of content overlaps text in static HTML (#1770) - Pluto hangs when cell contains `(md" ", md"$t")` (#1800) - Cell drag drop broken in Linux Chrome v97 (#1809) - Tables integration causes method ambiguities for `pluto_showable` (#1815) - Segfault with CSV, SQLite, tables (M1) (#1842) - Use RelocatableFolders.jl instead of project_relative_dir to allow sysimages (#1852) - Logging doesn't respect `maxlog` (#1858) - TOC in dark mode is still light when aside (#1860) - ProgressLogging: suppressed logging in Turing.jl (#1862) - Cannot update to version 0.17.7 (#1869) - Stdlib packages marked as not found (#1872) - EllipsisNotation.jl (`randn((10,10))[1, ..]`) does not work (#1875) - Too many intermediate bond values (#1891)
![https://mybinder.org/badge_logo.svg"></a](https://mybinder.org/badge_logo.svg"></a){kind=link}
pankgeorg
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Feb 8, 2022
> Try this release in your browser! _(Available 30 minutes after the release)_ > > <a href="https://binder.plutojl.org/v0.18.0/"><img alt="Binder logo" src="https://mybinder.org/badge_logo.svg"></a> **Generate your own binder links using [pluto-on-binder.glitch.me](https://pluto-on-binder.glitch.me/)!** [Diff since v0.17.7](v0.17.7...v0.18.0) **Merged pull requests:** - Make document currentscript work (#1765) (@dralletje) - don't count logs messages multiple times for pluto-logs width (#1843) (@Pangoraw) - Pattern matching system for lezer code (#1849) (@dralletje) - minor fix: Tables integration caused method ambiguation for Union{}[] (#1851) (@16bitmood) - Fix #1852, relocatable changes for sysimage usage. (#1853) (@MichaelHatherly) - Re-enable parseMixed (#1855) (@pankgeorg) - DOI in REAMDE for citation (#1864) (@rikhuijzer) - Use pkgdir instead of pathof (#1867) (@rikhuijzer) - Hide banner in CI (#1868) (@rikhuijzer) - Server-side events as configuration (#1871) (@ctrekker) - fix is_stdlib() for nightly and enable nightly tests (#1874) (@Pangoraw) - Awesome! Line wrapping! (#1876) (@dralletje) - respect maxlog keyword for logs, fixes #1858 (#1877) (@Pangoraw) - allow .. as an identifier, fixes #1875 (#1878) (@Pangoraw) - Server start event (#1882) (@ctrekker) - Julia 1.6 minimum (#1885) (@fonsp) - New heuristic to skip intermediate bond values (#1892) (@fonsp) - Send queued bond changes when last script finishes (#1898) (@fonsp) **Closed issues:** - Pkg.jl will corrupt itself on Windows (#671) - Failure creating JuMP DenseAxisArray (#806) - Frontend tests fail too often (#1234) - Open multiple notebooks at start and without browser (#1278) - Segmentation faults on Julia 1.7 M1 (#1722) - Table of content overlaps text in static HTML (#1770) - Pluto hangs when cell contains `(md" ", md"$t")` (#1800) - Cell drag drop broken in Linux Chrome v97 (#1809) - Tables integration causes method ambiguities for `pluto_showable` (#1815) - Segfault with CSV, SQLite, tables (M1) (#1842) - Use RelocatableFolders.jl instead of project_relative_dir to allow sysimages (#1852) - Logging doesn't respect `maxlog` (#1858) - TOC in dark mode is still light when aside (#1860) - ProgressLogging: suppressed logging in Turing.jl (#1862) - Cannot update to version 0.17.7 (#1869) - Stdlib packages marked as not found (#1872) - EllipsisNotation.jl (`randn((10,10))[1, ..]`) does not work (#1875) - Too many intermediate bond values (#1891)
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Hi,
the title can be improved but right now I don't know exactly what the issue is about - seems related to #1722
Context:
Zooming out of the specific task, I'm trying to come up with my own workflow for working with reasonable-sized data without having to rely too much on in-memory DataFrames.
Video here (available soon): https://youtu.be/lkeXCOHWfBc
Notebook: https://github.com/fonsp/Pluto.jl/files/7918391/v1.jl.zip
All files used can be retrieved here: https://vaers.hhs.gov/eSubDownload/index.jsp?fn=AllVAERSDataCSVS.zip
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