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78 Open 387 Closed
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Issues list

Make Cellpose task work for OME-Zarrs without pyramids maintenance
#742 opened May 18, 2024 by BioinfoTongLI
4
Centralize copying of tables functionality
#725 opened Apr 24, 2024 by jluethi
Drop image list updates with only updated_images_urls
#721 opened Apr 24, 2024 by jluethi
Enable other packages reusing tasks from fractal-tasks-core compound tasks
#704 opened Apr 15, 2024 by jluethi
3
Add unit tests for fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py helper functions testing
#696 opened Apr 11, 2024 by tcompa
In calculate_registration_image_based, should we check that zarr_url != reference_zarr_url? fractal_v2
#695 opened Apr 11, 2024 by tcompa
1
Add unit test for create_well_acquisition_dict fractal_v2 testing
#693 opened Apr 11, 2024 by tcompa
Add unit test for get_tables_list_v1 fractal_v2 Tables AnnData and ROI/feature tables testing
#692 opened Apr 11, 2024 by tcompa
Test the multi-plate case of create_cellvoyager_ome_zarr_init testing
#688 opened Apr 10, 2024 by jluethi
1
Illumination Correction with Channel parallelisation enhancement New feature or request fractal_v2
#687 opened Apr 10, 2024 by jluethi
@jluethi
Improve handling of potential existing zarr files in apply_registration_to_image
#683 opened Apr 10, 2024 by jluethi
Review NGFF models & Fractal OME-Zarr models enhancement New feature or request
#681 opened Apr 9, 2024 by tcompa
4
Consider including OMEZarrImage class in fractal-tasks-core
#678 opened Apr 4, 2024 by jluethi
1
Review whether zarr_urls have trailing slash or not fractal_v2
#677 opened Apr 4, 2024 by jluethi
8
Masking ROI tables should use the labels as index of the table as well
#672 opened Apr 1, 2024 by jluethi
Better support for OME-Zarr with singleton T dimension axes flexibility Handling 2-5D dimensions in OME-Zarr robustly
#663 opened Mar 4, 2024 by BioinfoTongLI
11
Drop assumption that Zarr HCS plates will contain .zarr in their filename
#660 opened Feb 26, 2024 by jluethi
Manage Cellpose 3.0 transition
#655 opened Feb 15, 2024 by jluethi
2
Review how-to-release docs page documentation Improvements or additions to documentation
#651 opened Feb 1, 2024 by tcompa
"Illumination correction" task requires additional instructions on how to generate illumination profiles
#641 opened Jan 17, 2024 by adrtsc
1
Add high-level load_roi function ROIs
#637 opened Dec 20, 2023 by jluethi
Feature wish Yokogawa converter: Improve subset selection Converters
#636 opened Dec 15, 2023 by jluethi
2
Refactor tests maintenance testing
#635 opened Dec 12, 2023 by tcompa
Refactor prepare_label_group?
#634 opened Dec 12, 2023 by tcompa
Refactor is_ROI_table_valid Tables AnnData and ROI/feature tables
#633 opened Dec 12, 2023 by tcompa
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