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utils.R
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utils.R
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# Global variables for GET request
API_VERSION <- "2.1" # Referenced in `npi_search()`
BASE_URL <- "https://npiregistry.cms.hhs.gov/api/"
USER_AGENT <- "http://github.com/frankfarach/npi"
MAX_N_PER_REQUEST <- 200L
#' Delay function execution
#'
#' @param f A function.
#' @param seconds Number of seconds delay to introduce before executing
#' \code{f}.
#' @return A new function that executes \code{seconds} seconds after it
#' is called.
#' @noRd
delay_by <- function(f, seconds) {
force(f)
force(seconds)
function(...) {
Sys.sleep(seconds)
f(...)
}
}
#' Handle bad function arguments
#'
#' Error handler to abort a bad argument, `arg`, based on its actual vs.
#' expected type or class, and display a templated error message.
#'
#' @param arg Function argument name as character vector
#' @param must Text to relate argument's name to its expected type
#' @param not Function argument (optional)
#' @param method Either "typeof" (default) or "class"
#' @return Error handler of class `error_bad_argument` with templated message
#' and metadata
#' @examples
#' a <- "foo"
#' b <- 1L
#'
#' # Check argument type
#' abort_bad_argument("a", must = "be integer", not = a) # Error
#' abort_bad_argument("b", must = "be integer", not = b) # No error
#'
#' # Check argument class
#' c <- factor(a)
#' abort_bad_argument("a", must = "be factor", not = a, method = "class")
#' @noRd
abort_bad_argument <- function(arg, must, not = NULL,
method = c("typeof", "class")) {
method <- match.arg(method)
msg <- paste0("`", arg, "`", " must ", must)
if (!is.null(not)) {
not <- ifelse(method == "typeof", typeof(not), class(not))
msg <- paste0(msg, ", not ", not, ".")
}
rlang::abort("error_bad_argument",
message = msg,
arg = arg,
must = must,
not = not
)
}
#' Remove NULL elements from vector
#'
#' Implements the basic functionality found in the \pkg{purrr} package's
#' \code{compact} function.
#' @noRd
remove_null <- function(l) {
Filter(Negate(is.null), l)
}
#' Check if candidate NPI number is valid
#'
#' Check whether a number is a valid NPI number per the specifications detailed
#' in the Final Rule for the Standard Unique Health Identifier for Health Care
#' Providers (69 FR 3434).
#'
#' @param x 10-digit candidate NPI number
#' @return Boolean indicating whether \code{npi} is valid
#' @examples
#' npi_is_valid(1234567893) # TRUE
#' npi_is_valid(1234567898) # FALSE
#' @export
npi_is_valid <- function(x) {
if (stringr::str_length(x) != 10 ||
stringr::str_detect(x, "\\d{10}",
negate = TRUE
)) {
rlang::abort("`x` must be a 10-digit number.")
}
x <- as.character(x)
# Prefix the NPI with code for US health applications per US governement
# requirements
x <- paste0("80840", x)
# Validate number using the Luhn algorithm
checkLuhn::checkLuhn(x)
}
#' Clean up credentials
#'
#' @param x Character vector of credentials
#' @return List of cleaned character vectors, with one list element per element
#' of \code{x}
#' @noRd
clean_credentials <- function(x) {
if (!is.character(x)) {
stop("x must be a character vector")
}
out <- gsub("\\.", "", x)
out <- stringr::str_split(out, "[,\\s;]+", simplify = FALSE)
out
}
#' Format United States (US) ZIP codes
#'
#' @param x Character vector
#'
#' @return Length \code{x} character vector hyphenated for ZIP+4 or 5-digit ZIP.
#' Invalid elements of \code{x} are not formatted.
#' @noRd
hyphenate_full_zip <- function(x) {
checkmate::assert(
checkmate::check_character(x),
checkmate::check_integerish(x),
combine = "or"
)
x <- as.character(x)
# Add a hyphen in the right place iff the element has exactly 9 digits;
# otherwise, leave the (possibly) invalid ZIP alone
zip_regex <- "^[[:digit:]]{9}$"
ifelse(
stringr::str_detect(x, zip_regex),
paste0(stringr::str_sub(x, 1, 5), "-", stringr::str_sub(x, 6, 9)),
x
)
}
#' Create full address from elements
#'
#' @param df Data frame
#' @param address_1 Quoted column name in \code{df} containing a character
#' vector of first-street-line addresses
#' @param address_2 Quoted column name in \code{df} containing a character
#' vector of second-street-line addresses
#' @param city Quoted column name in \code{df} containing a character vector of
#' cities
#' @param state Quoted column name in \code{df} containing a character vector of
#' two-letter state abbreviations
#' @param postal_code Quoted column name in \code{df} containing a character or
#' numeric vector of postal codes
#'
#' @return Character vector containing full one-line addresses
#' @noRd
make_full_address <-
function(df,
address_1,
address_2,
city,
state,
postal_code) {
stopifnot(
is.data.frame(df),
all(c(
address_1, address_2, city, state, postal_code
) %in% names(df))
)
stringr::str_c(
stringr::str_trim(df[[address_1]], "both"),
ifelse(df[[address_2]] == "", "", " "),
stringr::str_trim(df[[address_2]], "both"),
", ",
stringr::str_trim(df[[city]], "both"),
", ",
stringr::str_trim(df[[state]], "both"),
" ",
stringr::str_trim(df[[postal_code]], "both")
)
}
#' Check for new tidyr interface
#'
#' @return Boolean indicating whether a newer version of tidyr is installed
#' @noRd
tidyr_new_interface <- function() {
utils::packageVersion("tidyr") > "0.8.99"
}