Some notes on things I find interesting and important.
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README.md

I am a researcher and computer scientist. I was once in San Francisco, but am now traveling.

The following posts are in reverse chronological order: newest posts are first. If you are keen to follow a lower-volume repo, the squashed branch gets squashed merges when new posts hit. They don't get any edits until the next merge, though, so come back here for the definitive versions of text (or if you want to submit a PR).


A Datalog engine in Rust

The Rust folks have been working on a new bit of internals for ther compiler (specifically, the "borrow checker") and have been using Datalog to describe the rules. To make it all part of their toolchain, they were keen on a Rust implementations. In this post, we'll talk through writing a simple embeddable Datalog engine, with a few optimizations.

Update: The engine has been transfered to the Rust group, under the Datafrog imprint.


A differential dataflow query processor

Here we build a query processor in differential dataflow, meaning a single program that can take a query description as input and assemble a dataflow graph (in milliseconds) that can determine and maintain the query results (in more than milliseconds). This post is about how to write "general" dataflows, rather than hardwiring them in to code. Also, we go a fair bit faster than previously published work, which is always fun.


Things that count

As part of the previous post, I mentioned some accuracy numbers from wPINQ, a weighted extension of Privacy Integrated Queries. The most interesting of these numbers relate to counting things, and in this post we talk through how the wPINQ project managed to count things (produce cumulative density functions) with not unreasonable privacy and accuracy.


Uber's differential privacy .. probably isn't

Uber and Berkeley have been shopping around some new tech for treating SQL queries with differential privacy. In this post, we look through their publication, try out some of their code, and I at least come to the conclusion that perhaps they aren't quite there yet. The publication has five (5) reproducible numbers, zero (0) of which were correctly reported.


Yahoo's Steaming Benchmark

The Yahoo Streaming Benchmark is a pretty common way to evaluate mediocre stream processors. It is, in effect, a least common denominator benchmark, and when we peel back all of the non-stream-processing parts, we find a relatively simple core that a single processor can manage quite easily (at the rates existing distributed stream processors report).


Advent of Code

In which our intrepid hero attempts to implement the advent of code problems in differential dataflow. The answers are not always pretty, but the goal is more to try out problems that I wouldn't normally try to solve. Eventually I become weary and stop, as too many of the problems felt like "run this weird state machine with these weird rules".


Timely on Kafka

A quick post about round-tripping timely dataflow streams through Kafka, which recently became more performant than it was before. Other than some confusion at the start, and a performance issue in librdkafka, the experience was pleasant and I totally recommend rust-rdkafka.


Deep learnings about differential privacy

We tour through two ACM CCS papers about deep learning and privacy, which each touch on differential privacy. As you might expect, I have some criticism for the work, but ideally we also learn a bit about what you should and shouldn't do with deep learning. Maybe more on the shouldn't side, really.


COST in the land of differential dataflow

One month later, totally by coincidence, I make good on a promise to investigate the single-threaded time to evaluate 1,000,000 breadth-first search computations on graphs that change only slightly from one to the next. Differential dataflow is slower, of course, but with a bit of hand-holding we get it to within about 4x the time of the single-threaded implementation.


COST in the land of databases

In which we review three recent papers from the databases literature on graph processing, and find issues with their evaluations again. Each of the systems studied fails to distinguish themselves from simple single-threaded implementations written by your correspondent, and we spend a bunch of text making that point from several angles.


Big Data Stream Managers (BDSM)

I try and make the case that "big data stream managers", something like a "database management system" for high volume streams of collection updates, makes a lot of sense, doesn't currently exist, and could if you start from differential dataflow. There is a cool work in progress system that you can check out too!


Live PageRanking

We walk through a self-contained timely dataflow example where we build a pagerank computation that adapts to changes in its input, as it runs. What results is a computation that continually takes graph changes and course-corrects in place for the new pagerank computation. A few bugs and optimizations later, and we have something that seems to churn through updates quite briskly.


Memory management for big data

Many big data systems suffer because their underlying memory management is poor (often inherited from the JVM). In this post we'll walk through some of the issues, as well as some of the proposed solutions. I go on to claim that fast serialization can be a proxy for robust and configurable memory management, but that is certainly up for debate.


Throughput and latency in differential dataflow

This post starts to study the trade-off between throughput and latency in differential dataflow, and discovers some serious performance issues. Timely dataflow itself, in fact, had some poorly implemented internals that went quadratic under heavy churn. With this fixed we start to be able to explore how open-loop evaluation (where producers are decoupled from consumers) can reveal how system design choices affect latency as well as throughput.


Specialization in differential dataflow

Here we get to see a full implementation of a differential dataflow operator, for the special case of counting things that change with a totally ordered time. These simplifications make a specialized implementation tractable, and we get some decent performance improvements out of it too! This implementation lead to a specialized implementation for distinct as well.


Arrangement in differential dataflow

Differential dataflow manages its indexed state in such a way that operators can often share the state with each other. This reduces the required resources (computation, communication, and memory), but imposes some restrictions on how we can interact with the shared state. This post starts to describe how this works (it is, even now, a work in progress).


A TPC-H-like evaluation of differential dataflow

I spend a weekend implementing all 22 queries from TPCH, a data-warehousing (read: analytics) workload. This went surprisingly well, in that all the queries were relatively easy to express, and while most performed well I also got several hot tips for optimizations to perform, which then improved things further. It was a very productive weekend!


Differential dataflow 2017 roadmap

In which we review challenges set out last year, mostly related to handling lots of updates scalably, and at high volume. We've got answers for the challenges, but they are preliminary and could use some performance love, so we set up the next round of challenges with respect to performance (and memory footprint).


What I'm stuck on

A quick little post about the problem I'm currently hitting my head against. It turns out that my head was more powerful, and the problem relented.


High-resolution timestamps

An outline of how we handle high-resolution timestamps in differential dataflow, where a single timely dataflow message with a single capability can contain a large number of distinct logical times for differential dataflow. This requires a substantial re-think of many operators, multiple times it turns out.

There are several addendurata post-pendulated on the ass-end of this post, reflecting bits of progress made in opposition to poor performance.


Modular data organization

Rewriting the internals of differential dataflow involves thinking through a few different ways to represent data, and writing those representations out by hand repeatedly is a pain. In this post we go through how we restructure the data organization problem to produce many re-usable parts.


Differential dataflow status report

A status report on recent work on differential dataflow internals. The state management structure has been re-designed to allow more robust usage patterns, with large numbers of logical times. It also now supports a variety of new features, some of which may be useful in addition to being clever.


Two flavors of differential privacy

A brief post describing some of my misgiving about (epsilon, delta)-differential privacy, a relaxation of the "pure" epsilon-differential privacy. Mostly, I don't understand it at an intuitive level, and I'd love folks who do to explain why I shouldn't be as worried.


Differential privacy as a mutual information constraint

We skim through a recent ACM CCS paper relating differential privacy to mutual information. While the two are certainly related, there is a reason we didn't use mutual information when it came time to pick privacy definitions, and that was because it fails to distinguish between fundamentally distinct privacy mechanisms, e.g. releasing data in the clear and not doing that.


Tracking motifs in evolving graphs

A series of posts building up to a low-latency, data-parallel, worst-case optimal throughput system for maintaining arbitrary cyclic joins. That is a mouthful, so another way to think about it is that we track triangles in social graphs, as the edges come and go. But it is way cooler than just that, and should have some cool implications for Datalog processing and maintenance. And that is like the definition of cool.


Differential privacy and correlated data

A recent paper determines that differential privacy fails to provide guarantees when data are correlated. This turns out to be incorrect, but understanding why leads us into an investigation of expectations of data privacy; what should we reasonably believe to be kept a secret when we contribute sensitive data?


Lunchtime for data privacy

A post on the recently revitalized paper "no free lunch for data privacy". What does the paper mean, and what are its arguments about data privacy? My conclusion is that the authors results apply to a definition of privacy possibly distinct from what I at least view as data privacy: keeping your secrets even when you couldn't keep them yourself.


Differential Dataflow internals

A series of posts on the necessary internals for something like differential dataflow. This is mostly stream of consciousness, and doesn't really end. What happened was I realized where it needed to go next, that this was a bit of a pain, started to write that down but left it "in progress" as I figure out what is needed.


Differential Dataflow Roadmap

Some thoughts on where I would like differential dataflow to go. The short version is that it should be able to handle very fine grained updates at scale, which it doesn't currently do in any great way.


Dataflow as Database

In this post we'll look at whether dataflow programming constructs, differential dataflow in particular, can be used to effect the look and feel of a database: transactions, look-ups, schemas, durability, things like that. The answers are a mix of "yes!" and "yes! but, ...", but I hope all of them are at least a bit thought provoking.


Differential Dataflog

Datalog is a pretty interesting language, something like a version of SQL with an iterative loop wrapped around the whole thing. It fits very nicely within differential dataflow, which does all sorts of iterative data-parallel computations. In this post, we dive into some detail, and see that we can not only evaluate Datalog programs but interactively query their results.


Statistical inference considered harmful

A Usenix Security 2014 best paper, Privacy in Pharmacogenetics: An End-to-End Case Study of Personalized Warfarin Dosing has some angsty experiences with differential privacy. It turns out, from my point of view at least, that they mostly have non-concerns and should enjoy life more. And maybe put fewer pictures of dead bodies and toe-tags in their talks.


Differential privacy for dummies, redux

Jane Bambauer and Krish Muralidhar blogged about the reaction to their Fool's Gold article. In particular, I have previously responded to it, and they respond to some of the issues raised there. I think they remain mostly wrong, and try to explain why in this response to their response to my response.


Explaining outputs in modern computations

We look at techniques for automatically explaining individual outputs of a big data computation by using a small number of inputs. Want to know why two people are in the same connected component? How about the shortest path connecting them, answered and updated in realtime?


Differential privacy: an illustrated primer

A hands-on introduction to differential privacy, meant to help out folks who aren't really sure where to start but don't want to stop at just counting things.


Differential privacy for dummies

I'm back in Morocco, on my own time again, which means that I get to write whatever happens to be in my mind. Today, that was that lots of people critical of differential privacy seem to be pretty bad at ... math, writing, ... honesty. So, we have a walk-through of the sort of work that the non-technical fields publish about differential privacy, and how it has nearly no relation to reality.


Graph processing in 2016

In which I have a bunch of opinions about all the papers I had to read, review, and listen to in the past year, and what might be productive to do differently in the coming year. This is all a bunch of opinion, with a bit of technical detail hiding behind the blather.


Progress tracking in Timely Dataflow

Timely dataflow extends traditional distributed dataflow with a lightweight, asynchronous coordination mechanism: notifications. In this post we'll look in to how notifications, and progress tracking generally, work in the Rust version of timely dataflow. We'll recap a bit of what Naiad did for progress tracking, and explain where and when we've gone in a different direction. Possibly why, if my typing is good.


An introduction to Differential Dataflow, part 2

Let's look a bit more at differential dataflow, and start to work through some of the details about how it works. Where does the magic come from? How does differential dataflow manage to efficiently update complex iterative dataflows without redoing all sorts of work? Where will you finally be able to apply your understanding of Moebius inversion?

Learn how math actually makes computers go faster.


An introduction to Differential Dataflow, part 1

We are going to take a diversion from the cold reality of timely dataflow, into the fantasy world of differential dataflow, a world of lollipops and laptops where all of your big data computations instantaneously update whenever your input data change. What wonders await us in this magical world of imagination?


An introduction to Timely Dataflow in Rust, part 3

In part 3 we are going to build a small program to do breadth-first search in a random graph! That is basically the most important thing ever. As a side-effect, we will also see a more realistic program, get some numbers, think about some optimizations, and then broaden our minds with a neat new algorithm that fits timely dataflow's features really well.


An introduction to Timely Dataflow in Rust, part 2

In part 2 of the introduction to timely dataflow in Rust, we look at how to write custom operators, and how to use notifications, one of timely dataflow's defining characteristics. We'll get familiar with the unary_stream and unary_notify operators, and position ourselves for some graph computation in the next post.


An introduction to Timely Dataflow in Rust, part 1

It's been a long time since I've said anything about timely dataflow in Rust, and I don't think I've ever said anything about how to get started with it. I'm going to try and fix that now, by walking through some relatively simple examples of timely dataflow programming. We'll see how to set up a streaming timely dataflow computation, an iterative computation, and a streaming-iterative computation.

That sound amazing, right? There is going to be more, soon!


Epic Graph Battle of History: Chaos vs Order

A reader wrote in about the "Sorting out graph processing" post, with some questions about how well sorting works when compared against the newest as-yet-unpublished (but SOSP 2015 bound!) systems research on how best to process graphs. I didn't know the answer, but I set out to discover it!

The perf numbers for the system itself are not yet in (my contact is PDT), but I'll update with them as they flow in.

Update: Numbers for PageRank on Chaos are in. Other numbers will have to wait until October, says author.


Sorting out graph processing

We revisit the conventional wisdom that sorting is expensive, and random access is fast. In particular, if you think you might need to do a bunch of random accesses, maybe you should consider sorting the requests first. We look at some results in a paper from SOSP 2013 and see how speedy sorting algorithms likely change the trade-offs the paper proposes.

Also, differential dataflow goes a lot faster as a result of this stuff, so you should read about it.


The impact of fast networks on graph analytics, part 2.

Malte and I did a bit deeper into the sources of the performance discrepancies between GraphX and Timely dataflow. We measure many things, and work through some neat time series that look like

Timely


The impact of fast networks on graph analytics, part 1.

Malte Schwarzkopf and I look in to the question of to what degree does improving networking help in graph computation. We do some measurement, comparing a PageRank implementation in both GraphX and in Timely dataflow.


Differential graph computation

Prompted by reader questions, we take a light tour through some of the things that differential dataflow can do.

IMAGE ALT TEXT HERE


Abomonation: terrifying serialization

This post was so much fun to write. Also the code was fun to write. Imagine you want serialization to go as fast as possible, to still use Rust's type system, and maybe as a distant third requirement: memory safety. The approach isn't totally deranged, but please don't use it for your FinTech start-up (or at least let me short you if you do).


Data-parallelism in timely dataflow

Here we talk through, for the first time, how to write a data-parallel computation in timely dataflow. We use the example from the previous post: worst-case optimal joins. In cleaning up the text, I've realized that a good deal of it is out of date, so for code examples that actually work you mant want to check out the intro to timely dataflow.


Worst-case optimal joins, in dataflow

Would you be surprised to learn that for the last 40 years databases have been performing complex joins asymptotically suboptimally? How about instead, you learn how to write worst-case optimal joins (credit to Ngo et al) in timely dataflow.


Differential dataflow

This was a warning shot to incremental computation folks that differential dataflow would ride again. It is pretty rough, though. It was mostly just about getting off the ground, and me being surprised at how simple it was to get a functional prototype up and running on top of timely dataflow infrastructure. Since this post, differential dataflow has gotten much better.


Bigger data; same laptop

Based on the great reaction to the COST post, and in particular questions of "is it really big data?", I went and downloaded a 1TB graph dataset from Common Crawl. Then I ran the same algorithms using this dataset, and it was totally fine and I got measurements. Given that most of the other systems go belly up on much smaller datasets, we don't have measurements for them.


Scalability! But at what COST?

Surprise! My laptop is faster than many compute clusters running things like Spark, Giraph, GraphLab, and GraphX. This post relates work that Michael Isard, Derek Murray, and I did trying to provide reasonable baselines for graph processing systems, where we conclude that ZOMG are the current crop of systems nowhere near what you can do with one thread and about 10-20 lines of code.


Timely dataflow: core concepts

An introduction to some of the key concepts in the timely dataflow rethink. Rust imposes some restrictions, but generally there are smart changes to make to how a system views hierarchical dataflow graphs, from how Naiad did it (a flat pile of nodes and edges).


Timely dataflow: reboot

Notes about how I'm planning on doing this timely dataflow thing again, and why it is going to wreck shit.


Columnarization in Rust, part 2

Following on the previous on columnarization, we look more at how trait implementations can come into conflict, and one way to sort this out.


Columnarization in Rust

My first post on Rust, about a simple approach to columnar serialization using Rust traits.