fix docs build pandas error #41
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| name: pip installation | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - paper | |
| - binder | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| job: | |
| name: pip tcl ubuntu | |
| runs-on: ubuntu-latest | |
| env: | |
| compiler: 'gcc' | |
| symbols: 'no' | |
| disables: '' | |
| steps: | |
| - name: Clone AlloViz | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9.16" | |
| cache: "pip" | |
| cache-dependency-path: pip_requirements.txt | |
| # TCL IN UBUNTU | |
| - name: Checkout Tk | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: tcltk/tk | |
| ref: core-8-5-branch | |
| path: tk | |
| - name: Checkout Tcl | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: tcltk/tcl | |
| ref: core-8-5-branch | |
| path: tcl | |
| - name: Setup Environment (compiler=gcc) | |
| run: | | |
| sudo apt-get install tcl8.6-dev libxss-dev | |
| mkdir "$HOME/install" | |
| touch tk/doc/man.macros tk/generic/tkStubInit.c | |
| echo "CFGOPT=$CFGOPT --with-tcl=/usr/lib/tcl8.6" >> $GITHUB_ENV | |
| echo "CC=gcc" >> $GITHUB_ENV | |
| echo "TOOL_DIR=$(cd tcl/tools;pwd)" >> $GITHUB_ENV | |
| echo "BUILD_CONFIG_ID=$OPTS" >> $GITHUB_ENV | |
| working-directory: "." | |
| env: | |
| CFGOPT: --enable-symbols=no | |
| # $disables | |
| COMPILER: gcc | |
| OPTS: gcc-no | |
| - name: Configure (symbols=no) | |
| # opts=$disables) | |
| run: | | |
| ./configure $CFGOPT "--prefix=$HOME/install" || { | |
| cat config.log | |
| echo "::error::Failure during Configure" | |
| exit 1 | |
| } | |
| working-directory: tk/unix | |
| - name: Build | |
| run: | | |
| make binaries libraries || { | |
| echo "::error::Failure during Build" | |
| exit 1 | |
| } | |
| working-directory: tk/unix | |
| - name: Build Test Harness | |
| run: | | |
| make tktest || { | |
| echo "::error::Failure during Build" | |
| exit 1 | |
| } | |
| working-directory: tk/unix | |
| - name: Test-Drive Installation | |
| run: | | |
| make install || { | |
| echo "::error::Failure during Install" | |
| exit 1 | |
| } | |
| working-directory: tk/unix | |
| # - name: Cache pip deps | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: ${{ env.pythonLocation }} | |
| # key: | |
| # ${{ env.pythonLocation }}-pip-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('pip_requirements.txt') }}-${{ env.CACHE_NUMBER }} | |
| # env: | |
| # # Increase this value to reset cache if has not changed | |
| # CACHE_NUMBER: 0 | |
| # id: cache | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdf-dev | |
| python -m pip install -U --upgrade-strategy eager pip | |
| pip install -U --upgrade-strategy eager setuptools "numpy==1.23.5" wheel | |
| pip install -r pip_requirements.txt | |
| # if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install AlloViz | |
| run: pip install . | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| pytest test/test_submodules.py | |
| - name: Test pipeline | |
| run: pytest test/test_pipeline.py | |
| timeout-minutes: 2 | |
| continue-on-error: true | |
| - name: Test downloads | |
| run: pytest test/test_downloads.py | |
| timeout-minutes: 2 | |
| continue-on-error: true |