hsc can be ran from the command line: hsc [OPTIONS] <DIR> <COMMAND>, see also hsc --help and hsc -h.
There are two commands <COMMAND>, which are moran and exp-moran.
They have their options as well, see hsc <COMMAND> -h.
See here for more information about the output of the simulations and here for the documentation.
Use the python package hscpy to plot and process the output of the simulations.