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new python2 packages not in python3 #27
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This is the list of packages from Dirk's list that exist in Python3: alabaster |
Python 3 is very different from 2.7. It's easy to do the diff, but finding proper vetted 3.x packages takes much trail and error. |
just saw that a bunch of packages built for python2 have not made it into python3 (e.g. qiime scikit-learn)
petersen@rhino2:/home…-life-sciences$ diff -u /tmp/p2.list /tmp/p3.list
--- /tmp/p2.list 2017-01-28 06:05:42.842944308 -0800
+++ /tmp/p3.list 2017-01-28 06:08:32.769380146 -0800
@@ -1,212 +1,283 @@
+abstract-rendering (0.5.1)
+aenum (1.4.5)
+alabaster (0.7.9)
alembic (0.8.10)
-alnvu (0.1.0)
+anaconda-client (1.2.2)
+apiwrapper (0.1.7)
appdirs (1.4.0)
APScheduler (3.3.1)
+argcomplete (1.7.0)
argh (0.26.2)
astroid (1.4.9)
-awscli (1.11.43)
+astropy (1.3)
+autopep8 (1.2.4)
+awscli (1.11.35)
Babel (2.3.4)
backports.shutil-get-terminal-size (1.0.0)
-bcbio-gff (0.6.4)
-beautifulsoup4 (4.5.1)
-biom-format (2.1.5)
+beautifulsoup4 (4.5.3)
biopython (1.68)
+bitarray (0.8.1)
bitstring (3.1.5)
-bokeh (0.12.3)
-boto3 (1.4.3)
-botocore (1.5.6)
-burrito (0.9.1)
-burrito-fillings (0.1.1)
+blaze (0.10.1)
+bleach (1.5.0)
+blessings (1.6)
+blinker (1.4)
+blist (1.3.6)
+bokeh (0.12.4)
+boto3 (1.4.4)
+botocore (1.4.92)
+bpython (0.16)
+bz2file (0.98)
+CacheControl (0.11.7)
certifi (2017.1.23)
cffi (1.9.1)
+chardet (2.3.0)
click (6.7)
-cliff (2.3.0)
+cliff (2.4.0)
+cloudpickle (0.2.2)
+clyent (1.2.1)
cmd2 (0.6.9)
-cogent (1.5.3)
colorama (0.3.7)
-colorbrewer (0.1.1)
ConfigArgParse (0.11.0)
+configobj (5.0.6)
+contextlib2 (0.5.4)
cryptography (1.7.1)
+curtsies (0.2.11)
cutadapt (1.12)
cycler (0.10.0)
Cython (0.25.2)
+cytoolz (0.8.2)
+daemonize (2.4.7)
darkslide (2.3.3)
-datacache (0.4.20)
+dask (0.13.0)
+datashape (0.5.2)
+dbf (0.96.8)
deap (1.0.2)
debtcollector (1.10.0)
decorator (4.0.10)
deepTools (2.4.2)
+distributed (1.15.0)
+dnspython (1.15.0)
docutils (0.13.1)
dominate (2.3.1)
drmaa (0.7.6)
-easygui (0.98.0)
+easygui (0.98.1)
ecdsa (0.13)
-emperor (0.9.60)
-enum34 (1.1.6)
+epydoc (3.0.1)
+et-xmlfile (1.0.1)
+fastcache (1.0.2)
fasteners (0.14.1)
Flask (0.12)
flask-appconfig (0.11.1)
-Flask-Bootstrap (3.3.7.0)
+Flask-Bootstrap (3.3.7.1)
+Flask-Cors (3.0.2)
Flask-Debug (0.4.3)
Flask-Migrate (2.0.2)
flask-nav (0.6)
Flask-Script (2.0.5)
Flask-SQLAlchemy (2.1)
-Flask-WTF (0.13.1)
+Flask-WTF (0.14.2)
freezer (4.0.0.0b2)
funcsigs (1.0.2)
-functools32 (3.2.3.post2)
future (0.16.0)
-futures (3.0.5)
-gdata (2.0.18)
-gitdb2 (2.0.0)
-GitPython (2.1.1)
-google (1.9.3)
-gtfparse (0.0.6)
+greenlet (0.4.11)
h5py (2.7.0rc2)
-html5lib (0.999999999)
-HTSeq (0.6.1)
+HeapDict (1.0.0)
+html5lib (0.9999999)
+httplib2 (0.9.2)
idna (2.2)
+imagesize (0.7.1)
inflection (0.3.1)
-ipaddress (1.0.18)
+ip-associations-python-novaclient-ext (0.2)
+ipdb (0.10.1)
+ipykernel (4.5.2)
ipython (5.1.0)
ipython-genutils (0.1.0)
iso8601 (0.1.11)
+isort (4.2.5)
itsdangerous (0.24)
+jdcal (1.3)
+jedi (0.9.0)
Jinja2 (2.9.4)
jmespath (0.9.0)
+json2html (1.1.1)
jsonpatch (1.15)
jsonpointer (1.10)
jsonschema (2.5.1)
-keystoneauth1 (2.16.0)
+keyring (10.1)
+keystoneauth1 (2.18.0)
+lazr.uri (1.0.3)
lazy-object-proxy (1.2.2)
-ldap3 (2.1.1)
+ldap3 (2.2.0)
liac-arff (2.1.0)
+locket (0.2.0)
lockfile (0.12.2)
-lxml (3.7.2)
+logilab-common (1.3.0)
+lxml (3.7.1)
Mako (1.0.6)
Markdown (2.6.8)
MarkupSafe (0.23)
-matplotlib (2.0.0rc2)
-memoized-property (1.0.3)
+matplotlib (2.0.0)
+mccabe (0.5.3)
mincemeat (0.1.4)
-misopy (0.5.3)
+mistune (0.7.3)
mock (2.0.0)
monotonic (1.2)
+moves (0.1)
mpi4py (2.0.0)
+mpmath (0.19)
msgpack-python (0.4.8)
-natsort (3.5.6)
-ndg-httpsclient (0.4.2)
+multipledispatch (0.4.9)
+natsort (5.0.1)
netaddr (0.7.18)
netifaces (0.10.5)
+networkx (1.11)
+nltk (3.2.2)
nose (1.3.7)
+novaclient-auth-secretkey (0.1)
npyscreen (4.10.5)
Nuitka (0.5.25)
-numpy (1.12.0rc1)
+numexpr (2.6.1)
+numpy (1.12.0)
+numpydoc (0.6.0)
oauth (1.0.1)
-olefile (0.44)
-openstacksdk (0.9.11)
-os-client-config (1.24.0)
-osc-lib (1.2.0)
-oslo.concurrency (3.16.0)
-oslo.config (3.21.0)
-oslo.context (2.11.0)
-oslo.i18n (3.11.0)
+odo (0.5.0)
+olefile (0.43)
+openpyxl (2.4.1)
+openstacksdk (0.9.13)
+os-client-config (1.26.0)
+os-diskconfig-python-novaclient-ext (0.1.3)
+os-networksv2-python-novaclient-ext (0.26)
+os-virtual-interfacesv2-python-novaclient-ext (0.20)
+osc-lib (1.3.0)
+oslo.concurrency (3.18.0)
+oslo.config (3.22.0)
+oslo.context (2.12.0)
+oslo.i18n (3.12.0)
oslo.log (3.19.0)
-oslo.serialization (2.15.0)
-oslo.utils (3.21.0)
+oslo.serialization (2.16.0)
+oslo.utils (3.22.0)
packaging (16.8)
pandas (0.19.2)
+pandocfilters (1.4.1)
paramiko (2.1.1)
-parse (1.6.6)
-pathlib2 (2.2.1)
+path.py (10.1)
pathtools (0.1.2)
-paycheck (1.0.2)
+patsy (0.4.1)
pbr (1.10.0)
+pep8 (1.7.0)
pexpect (4.2.1)
pickleshare (0.7.4)
Pillow (4.0.0)
pip (9.0.1)
+ply (3.9)
positional (1.1.1)
+post-0 (0.0.0)
prettytable (0.7.2)
-progressbar33 (2.4)
prompt-toolkit (1.0.9)
+protobuf (3.2.0rc2)
psutil (5.0.1)
psycopg2 (2.6.2)
ptyprocess (0.5.1)
+public-0 (0.0.0)
+py (1.4.32)
+py2bit (0.2.0)
pyasn1 (0.1.9)
-pyastro (1.1)
pyBigWig (0.3.2)
PyClone (0.12.9)
+pycosat (0.6.1)
pycparser (2.17)
pycrypto (2.6.1)
pycurl (7.43.0)
PyDP (0.2.2)
-pyensembl (1.0.3)
-pygithub3 (0.5.1)
+pyflakes (1.4.0)
+PyGithub (1.29)
Pygments (2.2.0)
+PyGreSQL (5.0.3)
pyinotify (0.9.6)
+pylint (1.6.4)
pymongo (3.4.0)
pymssql (2.1.3)
PyMySQL (0.7.9)
-pynast (1.2.2)
+pyodbc (4.0.0)
pyOpenSSL (16.2.0)
pypandoc (1.3.3)
pyparsing (2.1.10)
-pyqi (0.3.2)
+PyQtX (0.1.2)
+pyrax (1.9.8)
pysam (0.9.1.4)
-python-cinderclient (1.9.0)
+pyserial (3.2.1)
+pytest (3.0.6)
+python-cinderclient (1.10.0)
python-dateutil (2.6.0)
+python-debian (0.1.28)
python-editor (1.0.3)
python-freezerclient (1.1.0)
-python-glanceclient (1.1.2)
-python-keystoneclient (3.8.0)
-python-memcached (1.58)
+python-glanceclient (2.6.0)
+python-hostlist (1.17)
+python-keystoneclient (3.10.0)
python-novaclient (7.0.0)
-python-openstackclient (3.6.0)
+python-openstackclient (3.7.0)
python-pam (1.8.2)
python-swiftclient (3.2.0)
pytz (2016.10)
-PyVCF (0.6.8)
+pyxdg (0.25)
PyYAML (3.12)
-qcli (0.1.1)
-qiime (1.9.1)
-qiime-default-reference (0.1.3)
+pyzmq (16.0.2)
qrcode (5.3)
+QtAwesome (0.4.3)
+qtconsole (4.2.1)
+QtPy (1.2.1)
+rackspace-auth-openstack (1.3)
+rackspace-novaclient (2.1)
+rax-default-network-flags-python-novaclient-ext (0.4.0)
+rax-scheduled-images-python-novaclient-ext (0.3.1)
+redis (2.10.5)
reportlab (3.3.0)
-requests (2.12.4)
+request-0 (0.0.0)
+requests (2.13.0)
requestsexceptions (1.1.3)
rfc3986 (0.4.1)
-rpy2 (2.8.5)
+roman (2.0.0)
rsa (3.4.2)
+ruffus (2.6.3)
+s3fs (0.0.8)
s3transfer (0.1.10)
scandir (1.4)
-scikit-bio (0.2.3)
-scikit-learn (0.18.1)
scipy (0.18.1)
-seqmagick (0.6.1)
-serializable (0.1.1)
-setuptools (32.2.0)
-shove (0.6.6)
+SecretStorage (2.3.1)
+setuptools (28.8.0)
simplegeneric (0.8.1)
simplejson (3.10.0)
singledispatch (3.4.0.3)
six (1.10.0)
-smmap2 (2.0.1)
+snowballstemmer (1.2.1)
+sockjs-tornado (1.0.3)
+sortedcollections (0.4.2)
+sortedcontainers (1.5.7)
+Sphinx (1.5.2.dev20170126)
+spyder (3.1.2)
SQLAlchemy (1.1.5)
+ssh-import-id (5.6)
+stdeb (0.8.5)
stevedore (1.19.1)
-stuf (0.9.16)
-subprocess32 (3.2.7)
-tinytimer (0.0.0)
+swiftly (2.6)
+sympy (1.0)
+tblib (1.3.0)
+terminado (0.6)
+toolz (0.8.2)
+tornado (4.4.2)
traitlets (4.3.1)
twobitreader (3.1.4)
-typechecks (0.0.2)
tzlocal (1.3)
+ujson (1.35)
unicodecsv (0.14.1)
uritemplate (3.0.0)
urwid (1.3.1)
+utils (0.9.0)
virtualenv (15.1.0)
visitor (0.1.3)
+wadllib (1.3.2)
warlock (1.3.0)
watchdog (0.8.3)
wcwidth (0.1.7)
@@ -215,4 +286,10 @@
wheel (0.30.0a0)
wrapt (1.10.8)
WTForms (2.1)
+xlrd (1.0.0)
+XlsxWriter (0.9.6)
xopen (0.1.1)
+ZConfig (3.1.0)
+zict (0.1.1)
+zmq (0.0.0)
+zope.interface (4.3.3)
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