Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

module nextflow/23.04.0 not working #543

Closed
SarahNadeau opened this issue Apr 14, 2023 · 1 comment
Closed

module nextflow/23.04.0 not working #543

SarahNadeau opened this issue Apr 14, 2023 · 1 comment

Comments

@SarahNadeau
Copy link

I loaded the module using:

module --ignore-cache load "nextflow/23.04.0"

And as I wrote in my comment, it seems the installation of nextflow is somehow broken:

@fizwit I'm sorry if I'm just being thick, but I can't seem to get the new module working. Here's what I tried:

snadeau@gizmoj9:~$ module list

Currently Loaded Modules:
  1) Java/11.0.2     3) ncurses/6.1-GCCcore-8.3.0
  2) GCCcore/8.3.0   4) nextflow/23.04.0

 

snadeau@gizmoj9:~$ nextflow --help
CAPSULE EXCEPTION: java.io.IOException: Cannot run program "$EBROOTJAVA/bin/java": error=2, No such file or directory (for stack trace, run with -Dcapsule.log=verbose)
Unable to initialize nextflow environment

Originally posted by @SarahNadeau in #542 (comment)

@fizwit
Copy link
Member

fizwit commented Apr 15, 2023

sorry fixed. Please purge and reload the module.

ml nextflow
$ nextflow -v
nextflow version 23.04.0.5858

@fizwit fizwit closed this as completed Apr 15, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants