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1. cov-europe-bdmm cov-europe-bdmm Public

   Code for the publication "The origin and early spread of SARS-CoV-2 in Europe"

   R 3 1

2. cevo-public/Grapevine-SARS-CoV-2-Introduction-Analysis cevo-public/Grapevine-SARS-CoV-2-Introduction-Analysis Public

   Pipeline for estimating putatively independent introductions of SARS-CoV-2 from genome sequences.

   R

3. cevo-public/POUMM-GWAS cevo-public/POUMM-GWAS Public

   Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

   TeX 1

4. cevo-public/harvester-database-and-automation cevo-public/harvester-database-and-automation Public

   The database and automation infrastructure used in the Swiss SARS-CoV-2 Sequencing Consortium (S3C)

   Java

5. cluster-detection cluster-detection Public

   R 1