3.0.6

There was an issue in the auxiliary list of PSMs that supplement the list of discovered peptides. Not all of them were being reported. This has been fixed.

3.0.5

• Included pyascore functionality.
• Fixed a bug related to Comet when --accounts_mods T

3.0.4

Fixed minor issue regarding printing auxilary list of additional PSMs when there are no open-groups

3.0.3

Added a column that indicates whether the additionally reported PSMs exceed their corresponding group threshold.

3.0.2

• Fixed a small bug related to printing when no discoveries are made.

3.0.1

• Reverted dynamic level competition so that it is done on stem sequence.
• Added reporting feature of delta masses and variable mods of discovered peptides.

2.1.5

• Fixed bugs relating to MSFragger search inputs.
• Correctly reporting alternative proteins using the @@ delimiter.

2.1.1

• Added option to get q-vals.

2.1.0

• Corrected the dynamic level competition so that it clusters based on the neutral mass instead of charged mass.

2.0.0

• Fixed seed
• Simplified the CONGA tool so that the narrow variant of the PSM would be used prior to filtering instead of considering the open PSM
• Protein is now reported
• Most importantly, updated the dynamic level competition in order to consider delta masses.
• Prints version when python3 -m CONGA is called