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predmicror

The predmicror is a collection of predictive microbiology models commonly fitted to experimental data. This first version includes a set of most popular full, reduced an no lag growth models.

Installation

You can install the predmicror development version from GitHub: https://github.com/fsqanalytics/predmicror using the devtools package:

install.packages("devtools")
devtools::install_github("fsqanalytics/predmicror")

Using predmicror

The easiest way to get started with predmicror is to work through the examples in the vignettes, where you can find information on:

  • What your input data should look like
  • How to fit a full growth curve
  • How to fit a reduced growth curve
  • How to fit a no lag growth curve

You can find the vignettes at the predmicror website https://github.com/fsqanalytics/fsqanalystics.github.io.

Reporting bugs

You can report bugs at: https://github.com/fsqanalytics/predmicror/issues

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A package for fitting predictive microbiology models to experimental data

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