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@ftdc-picsl

Penn FTDC-PICSL group

Collaborative projects from the FTD Center and PICSL lab http://ftd.med.upenn.edu/our-center

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  1. antsct-aging antsct-aging Public

    ANTs cortical thickness pipeline container, contains a template for older individuals

    Perl 1 2

  2. fwCustomDeidentification fwCustomDeidentification Public archive

    Script to generate custom de-identification profiles for Flywheel, and example profiles

    Python 2

  3. pmacsPreps pmacsPreps Public

    *prep wrapper scripts for the PMACS cluster

    Shell 1

  4. QuANTs QuANTs Public

    Quality control, quantifying regional values, and querying of ANTs output

    R

Repositories

Showing 10 of 29 repositories
  • antsnetct Public

    Cortical thickness with ANTsPyNet

    ftdc-picsl/antsnetct’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 3, 2024
  • pmacsSynthSeg Public

    Wrapper to run synthseg on the PMACS LPC

    ftdc-picsl/pmacsSynthSeg’s past year of commit activity
    Python 1 0 0 0 Updated Jun 27, 2024
  • penn-pet Public

    Development of a basic brain PET processing pipeline for the UPenn community

    ftdc-picsl/penn-pet’s past year of commit activity
    Shell 0 BSD-3-Clause 3 0 0 Updated Jun 13, 2024
  • antsct-aging Public

    ANTs cortical thickness pipeline container, contains a template for older individuals

    ftdc-picsl/antsct-aging’s past year of commit activity
    Perl 1 Apache-2.0 2 0 0 Updated Jun 12, 2024
  • pmacsANTsPyNet Public

    Framework for running ANTsPyNet tools on the PMACS LPC

    ftdc-picsl/pmacsANTsPyNet’s past year of commit activity
    Python 0 0 0 0 Updated May 21, 2024
  • PhantomEddyQC Public

    Script to check a phantom scan for eddy distortions affecting the b=0 volumes

    ftdc-picsl/PhantomEddyQC’s past year of commit activity
    Shell 0 Apache-2.0 0 1 0 Updated May 10, 2024
  • T1wPreprocessing Public

    Container for pre-processing T1w data before running structural analyses

    ftdc-picsl/T1wPreprocessing’s past year of commit activity
    Python 0 0 1 0 Updated May 1, 2024
  • pmacsAntsnetct Public

    Wrapper for submitting antsnetct jobs on the PMACS cluster

    ftdc-picsl/pmacsAntsnetct’s past year of commit activity
    0 0 0 0 Updated Apr 23, 2024
  • pmacsPreps Public

    *prep wrapper scripts for the PMACS cluster

    ftdc-picsl/pmacsPreps’s past year of commit activity
    Shell 0 MIT 1 1 0 Updated Apr 23, 2024
  • pmacsT1wPreprocessing Public

    Wrapper to run T1wPreprocessing container on the LPC

    ftdc-picsl/pmacsT1wPreprocessing’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 1, 2024
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