GitHub - fudiyi/RNA-seq: RNA-seq analysis

RNA-Seq分析流程请优先查看 RNA-Seq详细说明 文档，该文档说明的比较详细；

DESeq2-筛选差异基因及 python-筛选差异基因两文档可对分析得到的表达矩阵进行一步法提取差异基因；

Name		Name	Last commit message	Last commit date
Latest commit History 77 Commits
DEseq.r		DEseq.r
DEseq2-筛选差异基因.md		DEseq2-筛选差异基因.md
DEseq2.R		DEseq2.R
PCA_result.pdf		PCA_result.pdf
README.md		README.md
RNA-Seq（ hisat2 + cufflink or stringtie )		RNA-Seq（ hisat2 + cufflink or stringtie )
RNA-seq 详细说明.md		RNA-seq 详细说明.md
all_counts.txt		all_counts.txt
counts_TPM.R		counts_TPM.R
counts_to_TPM.py		counts_to_TPM.py
down_ treat1 _vs_ WT .csv		down_ treat1 _vs_ WT .csv
down_ treat2 _vs_ WT .csv		down_ treat2 _vs_ WT .csv
linux实用命令.md		linux实用命令.md
linux软件安装方法.md		linux软件安装方法.md
normalized.csv		normalized.csv
python-筛选差异基因.md		python-筛选差异基因.md
reads.txt		reads.txt
shell程序运行相关问题及解决方法汇总		shell程序运行相关问题及解决方法汇总
tpm_results.csv		tpm_results.csv
up_ treat1 _vs_ WT .csv		up_ treat1 _vs_ WT .csv
up_ treat2 _vs_ WT .csv		up_ treat2 _vs_ WT .csv

fudiyi/RNA-seq