Seq-SetNet

About The Project

The implementation of the paper "Seq-SetNet: directly exploiting multiple sequence alignment for protein structure prediction".

Getting Started

Prerequisites

Install PyTorch 1.4+

Installation

1. Clone the repo

git clone https://github.com/fusong-ju/Seq-SetNet.git

Usage

1. Generate a3m format MSA for a given target sequence using hhblits
2. Run Seq-SetNet

run_inference.sh <MSA> <out_path>

Example

cd example
./run_example.sh

License

Distributed under the MIT License. See LICENSE for more information.