Scripts and programs that use particle collisions simulations to study extensions of the S(E)IR model.
-
dynamo/
: Python scripts for preparing input files for, and reformatting output files from, the DynamO particle simulator. -
c-SIR/
: C-code for running the SIR model (or extensions of it) over a collisions list file, as produced by DynamO and reformatted bydynamo/convert.py
. -
run/
: Python scripts that runc-SIR
. -
analysis/
: Python scripts for post-processing and visualizing the output fromc-SIR
.