add sequence location sequence

ga4gh · Apr 19, 2024 · 5617264 · 5617264
1 parent 6a8e955
commit 5617264
Show file tree

Hide file tree

Showing 3 changed files with 12 additions and 0 deletions.
diff --git a/schema/vrs/def/SequenceLocation.rst b/schema/vrs/def/SequenceLocation.rst
@@ -52,3 +52,7 @@ Some SequenceLocation attributes are inherited from :ref:`Ga4ghIdentifiableObjec
       - integer | :ref:`Range`
       - 0..1
       - The end coordinate or range of the SequenceLocation. The minimum value of this coordinate or range is 0. MUST represent a coordinate or range greater than or equal to the value of `start`.
+   *  - sequence
+      - :ref:`SequenceString`
+      - 0..1
+      - The literal sequence encoded by the `sequenceReference` at these coordinates.
diff --git a/schema/vrs/json/SequenceLocation b/schema/vrs/json/SequenceLocation
@@ -77,6 +77,10 @@
             }
          ],
          "description": "The end coordinate or range of the SequenceLocation. The minimum value of this coordinate or range is 0. MUST represent a coordinate or range greater than or equal to the value of `start`."
+      },
+      "sequence": {
+         "description": "The literal sequence encoded by the `sequenceReference` at these coordinates.",
+         "$ref": "/ga4gh/schema/vrs/2.x/json/SequenceString"
       }
    },
    "required": [],

diff --git a/schema/vrs/vrs-source.yaml b/schema/vrs/vrs-source.yaml
@@ -345,6 +345,10 @@ $defs:
           The end coordinate or range of the SequenceLocation.
           The minimum value of this coordinate or range is 0.
           MUST represent a coordinate or range greater than or equal to the value of `start`.
+      sequence:
+        description: >-
+          The literal sequence encoded by the `sequenceReference` at these coordinates.
+        $ref: "#/$defs/SequenceString"
 
   SequenceReference:
     maturity: draft