Merge pull request #54 from vyepez88/code_cleaning

Code cleaning
gagneurlab · May 28, 2020 · 5453a69 · 5453a69
2 parents 2c81606 + be53577
commit 5453a69
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -58,10 +58,10 @@ before_script:
   - cd $PROJECT_DIR
   - drop demo
 
-script: true
-#  - cd $PROJECT_DIR
-#  - snakemake -n
-#  - snakemake aberrantExpression --cores 2
+script:
+  - cd $PROJECT_DIR
+  - snakemake -n
+  - snakemake aberrantExpression --cores 2
 #  - snakemake aberrantSplicing --cores 2
-#  - snakemake mae --cores 2
-#  - snakemake --cores 2
+  - snakemake mae --cores 2
+  - snakemake --cores 2
diff --git a/drop/modules/aberrant-expression-pipeline b/drop/modules/aberrant-expression-pipeline
diff --git a/drop/template/config.yaml b/drop/template/config.yaml
@@ -34,7 +34,7 @@ aberrantSplicing:
     keepNonStandardChrs: true
     filter: true
     minExpressionInOneSample: 20
-    minDeltaPsi: 0
+    minDeltaPsi: 0.05
     implementation: PCA
     padjCutoff: 0.05
     zScoreCutoff: 0