check if dict does not exist

gagneurlab · Mar 16, 2022 · a29acaf · a29acaf
1 parent ca8d980
commit a29acaf
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/drop/modules/mae-pipeline/Snakefile b/drop/modules/mae-pipeline/Snakefile
@@ -27,8 +27,7 @@ rule create_dict:
 	    """
 		for fasta in {input}
 		  do
-		  if [ -f "${{fasta%.*}}.dict" ]; then
-          else
+		  if [ ! -f "${{fasta%.*}}.dict" ]; then
 		    gatk CreateSequenceDictionary --REFERENCE $fasta
           fi
 		done