Merge pull request #350 from schance995/fix-exportCounts-typo

Fix typo in exportCounts input
gagneurlab · Aug 2, 2022 · b45cf0c · b45cf0c
2 parents 71ec689 + 8e1f961
commit b45cf0c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/drop/modules/aberrant-splicing-pipeline/Counting/exportCounts.R b/drop/modules/aberrant-splicing-pipeline/Counting/exportCounts.R
@@ -10,7 +10,7 @@
 #'  input:
 #'   - annotation: '`sm cfg.getProcessedDataDir() + "/preprocess/{annotation}/txdb.db"`'
 #'   - fds_theta: '`sm cfg.getProcessedDataDir() + 
-#'                    "/aberrant_splicing/datasets/savedObjects/raw-{dataset}/theta.h5"`'
+#'                    "/aberrant_splicing/datasets/savedObjects/raw-local-{dataset}/theta.h5"`'
 #'  output:
 #'    - k_counts: '`sm expand(cfg.exportCounts.getFilePattern(str_=True, expandStr=True) + "/k_{metric}_counts.tsv.gz", metric=["j", "theta"])`'
 #'    - n_counts: '`sm expand(cfg.exportCounts.getFilePattern(str_=True, expandStr=True) + "/n_{metric}_counts.tsv.gz", metric=["psi5", "psi3", "theta"])`'