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vyepez88 committed Sep 20, 2022
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Expand Up @@ -63,21 +63,21 @@ snakemake aberrantExpression --cores 10
The following publicly-available datasets of gene counts can be used as controls.
Please cite as instructed for each dataset.

* 154 non-strand specific fibroblasts, build hg19, Technical University of Munich: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4646822.svg)](https://doi.org/10.5281/zenodo.4646822)
* 154 non strand-specific fibroblasts, build hg19, Technical University of Munich: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4646822.svg)](https://doi.org/10.5281/zenodo.4646822)

* 269 strand specific fibroblasts, build hg19, Technical University of Munich: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4646826.svg)](https://doi.org/10.5281/zenodo.4646826)
* 269 strand-specific fibroblasts, build hg19, Technical University of Munich: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4646826.svg)](https://doi.org/10.5281/zenodo.4646826)

* 49 tissues, each containing hundreds of samples, non-strand specific, build hg19, GTEx: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5596755.svg)](https://doi.org/10.5281/zenodo.5596755)
* 49 tissues, each containing hundreds of samples, non strand-specific, build hg19, GTEx: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5596755.svg)](https://doi.org/10.5281/zenodo.5596755)

* 49 tissues, each containing hundreds of samples, non-strand specific, build hg38, GTEx: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6078396.svg)](https://doi.org/10.5281/zenodo.6078396)
* 49 tissues, each containing hundreds of samples, non strand-specific, build hg38, GTEx: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6078396.svg)](https://doi.org/10.5281/zenodo.6078396)

* 139 strand specific fibroblasts, build hg19, Baylor College of Medicine: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3963473.svg)](https://doi.org/10.5281/zenodo.3963473)
* 139 strand-specific fibroblasts, build hg19, Baylor College of Medicine: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3963473.svg)](https://doi.org/10.5281/zenodo.3963473)

* 125 strand specific blood, build hg19, Baylor College of Medicine: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3963470.svg)](https://doi.org/10.5281/zenodo.3963470)
* 125 strand-specific blood, build hg19, Baylor College of Medicine: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3963470.svg)](https://doi.org/10.5281/zenodo.3963470)

* 330 strand specific induced pluripotent stem cells (iPSCs), build hg19, EMBL: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7022459.svg)](https://doi.org/10.5281/zenodo.7022459)
* 330 strand-specific induced pluripotent stem cells (iPSCs), build hg19, EMBL: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7022459.svg)](https://doi.org/10.5281/zenodo.7022459)

* 56 non-strand specific amniotic fluid cells, build hg19, The University of Hong Kong: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7079684.svg)](https://doi.org/10.5281/zenodo.7079684)
* 56 non strand-specific amniotic fluid cells, build hg19, The University of Hong Kong: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7079684.svg)](https://doi.org/10.5281/zenodo.7079684)

If you want to contribute with your own count matrices, please contact us: yepez at in.tum.de

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