Merge pull request #32 from vyepez88/code_cleaning

Code cleaning
gagneurlab · Apr 15, 2020 · dc80c90 · dc80c90
2 parents 6f8cdf9 + 342df5c
commit dc80c90
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/drop/configHelper.py b/drop/configHelper.py
@@ -134,7 +134,7 @@ def setDefaults(self, config, method=None):
             setKey(config, ["aberrantSplicing"], "filter", True, verbose=VERBOSE)
             setKey(config, ["aberrantSplicing"], "minExpressionInOneSample", 20, verbose=VERBOSE)
             setKey(config, ["aberrantSplicing"], "minDeltaPsi", 0, verbose=VERBOSE)
-            setKey(config, ["aberrantSplicing"], "correction", "PCA", verbose=VERBOSE)
+            setKey(config, ["aberrantSplicing"], "implementation", "PCA", verbose=VERBOSE)
             setKey(config, ["aberrantSplicing"], "padjCutoff", 0.05, verbose=VERBOSE)
             setKey(config, ["aberrantSplicing"], "zScoreCutoff", 0.05, verbose=VERBOSE)
             setKey(config, ["aberrantSplicing"], "deltaPsiCutoff", 0.05, verbose=VERBOSE)

diff --git a/drop/modules/aberrant-splicing-pipeline b/drop/modules/aberrant-splicing-pipeline
diff --git a/drop/template/config.yaml b/drop/template/config.yaml
@@ -33,7 +33,7 @@ aberrantSplicing:
     filter: true
     minExpressionInOneSample: 20
     minDeltaPsi: 0
-    correction: PCA
+    implementation: PCA
     padjCutoff: 0.05
     zScoreCutoff: 0
     deltaPsiCutoff: 0.3