update minor version nr

README.md

@@ -12,7 +12,7 @@ The manuscript is available in [Nature Protocols](https://www.nature.com/article
 
 ## What's new
 
-Versions 1.3.2 and 1.3.1 fix some bugs.
+Versions 1.3.3, 1.3.2 and 1.3.1 fix some bugs.
 Version 1.3.0 introduces the option to use FRASER 2.0 which is an improved version of FRASER that uses the Intron Jaccard Index metric instead of percent spliced in and splicing efficiency to quantify and later call aberrant splicing. To run FRASER 2.0, modify the `FRASER_version` parameter in the aberrantSplicing dictionary in the config file and adapt the `quantileForFiltering` and `deltaPsiCutoff` parameters. See the [config template](https://github.com/gagneurlab/drop/blob/master/drop/template/config.yaml) for more details. When switching between FRASER versions, we recommend running DROP in a
 separate folder for each version. Moreover, DROP now allows users to provide lists of genes to focus on and do the multiple testing correction instead of the usual transcriptome-wide approach. Refer to the [documentation](https://gagneurlab-drop.readthedocs.io/en/latest/prepare.html#limiting-fdr-correction-to-subsets-of-genes-of-interest).
 
@@ -33,7 +33,7 @@ mamba create -n drop_env -c conda-forge -c bioconda drop --override-channels
 
 In the case of mamba/conda troubles we recommend using the fixed `DROP_<version>.yaml` installation file we make available on our [public server](https://www.cmm.in.tum.de/public/paper/drop_analysis/). Install the current version and use the full path in the following command to install the conda environment `drop_env`
 ```
-mamba env create -f DROP_1.3.2.yaml
+mamba env create -f DROP_1.3.3.yaml
 ```
 
 Test installation with demo project

docs/source/conf.py

@@ -23,7 +23,7 @@
 author = 'Michaela Müller'
 
 # The full version, including alpha/beta/rc tags
-release_ = '1.3.2'
+release_ = '1.3.3'
 
 
 

docs/source/installation.rst

@@ -20,7 +20,7 @@ Install the latest version and use the full path in the following command to ins
 
 .. code-block:: bash
 
-    mamba env create -f DROP_1.3.2.yaml
+    mamba env create -f DROP_1.3.3.yaml
 
 Installation time: ~ 10min
 

drop/__init__.py

@@ -4,5 +4,5 @@
 from . import utils
 from . import demo
 
-__version__ = "1.3.2"
+__version__ = "1.3.3"
 

drop/cli.py

@@ -17,7 +17,7 @@
 
 @click.group()
 @click_log.simple_verbosity_option(logger)
-@click.version_option('1.3.2',prog_name='drop')
+@click.version_option('1.3.3',prog_name='drop')
 
 
 def main():

setup.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.3.2
+current_version = 1.3.3
 commit = True
 
 [bumpversion:file:setup.py]

setup.py

@@ -21,7 +21,7 @@
 
 setuptools.setup(
     name="drop",
-    version="1.3.2",
+    version="1.3.3",
 
     author="Vicente A. Yépez, Michaela Müller, Nicholas H. Smith, Daniela Klaproth-Andrade, Luise Schuller, Ines Scheller, Christian Mertes <mertes@in.tum.de>, Julien Gagneur <gagneur@in.tum.de>",
     author_email="yepez@in.tum.de",