ADD: Dockerfile: docker image

docker/Dockerfile

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+FROM ubuntu:18.04
+
+LABEL maintainer="tmiller@mochsl.org.br"
+
+ENV SIDER_ROOT="/sider"
+
+COPY . ${SIDER_ROOT}
+
+RUN apt-get update \
+  && apt-get install -y \
+    ninja-build \
+    python3 \
+    python3-pip \
+    python3-setuptools \
+    python3-wheel \
+  && pip3 install meson \
+  && apt-get clean \
+  && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+RUN cd ${SIDER_ROOT} \
+  && meson build \
+  && ninja -C build \
+  && ninja -C build install
+
+ENTRYPOINT ["sider"]

docker/README.md

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+# Dockerfile for sideRETRO
+
+A pipeline for detecting Somatic Insertion of DE novo RETROcopies
+
+## Getting Started
+
+These instructions will cover installation and usage information for the docker container.
+
+### Prerequisities
+
+In order to run this container you'll need docker installed.
+
+* [Windows](https://docs.docker.com/windows/started)
+* [OS X](https://docs.docker.com/mac/started/)
+* [Linux](https://docs.docker.com/linux/started/)
+
+### Acquiring sideRETRO Image
+
+#### Manual Installation
+
+Clone **sideRETRO** repository:
+
+`$ git clone https://github.com/galantelab/sideRETRO.git`
+
+Inside `sideRETRO/` folder:
+
+`$ docker build -t sider -f docker/Dockerfile .`
+
+#### Pulling Image
+
+Pull **sideRETRO** image from [dockerhub](https://hub.docker.com) registry:
+
+`$ docker pull galantelab/sider`
+
+It's possible to pull a specific image version by appending a colon with the required tag.
+For example:
+
+`$ docker pull galantelab/sider:dev`
+
+For a complete list of **sideRETRO** versions, please access the dockerhub tag page: <https://hub.docker.com/r/galantelab/sider/tags/>
+
+### Setting
+
+Mac users may need to change the default settings in order to make use
+of all CPUs and memory. For a complete tutorial, see: [Get started with Docker Desktop for Mac](https://docs.docker.com/docker-for-mac/#preferences-menu)
+
+### Usage
+
+#### Container Examples
+
+`$ docker run galantelab/sider`
+
+By default **sideRETRO** runs in a container-private folder. You can change this using flags, like user (-u),
+current directory, and volumes (-w and -v). E.g. this behaves like an executable standalone and gives you
+the power to process files outside the container:
+
+```
+$ docker run \
+	--rm \
+	-u $(id -u):$(id -g) \
+	-v $(pwd):$(pwd) \
+	-w $(pwd) \
+	galantelab/sider ps -a exon.gff in.bam
+```
+
+How to get a shell started in your container:
+
+`$ docker run -ti --entrypoint bash galantelab/sider`
+