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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
import ast
import os
import re
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
SOURCE_DIR = "galaxy"
_version_re = re.compile(r'__version__\s+=\s+(.*)')
with open('%s/__init__.py' % SOURCE_DIR, 'rb') as f:
init_contents = f.read().decode('utf-8')
def get_var(var_name):
pattern = re.compile(r'%s\s+=\s+(.*)' % var_name)
match = pattern.search(init_contents).group(1)
return str(ast.literal_eval(match))
version = get_var("__version__")
PROJECT_NAME = get_var("PROJECT_NAME")
PROJECT_URL = get_var("PROJECT_URL")
PROJECT_AUTHOR = get_var("PROJECT_AUTHOR")
PROJECT_EMAIL = get_var("PROJECT_EMAIL")
TEST_DIR = 'tests'
PROJECT_DESCRIPTION = 'Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.'
PACKAGES = [
'galaxy',
'galaxy.containers',
'galaxy.jobs', # Incomplete
'galaxy.exceptions',
'galaxy.jobs.metrics',
'galaxy.jobs.metrics.collectl',
'galaxy.jobs.metrics.instrumenters',
'galaxy.objectstore',
'galaxy.tools', # Incomplete
'galaxy.tools.cwl',
'galaxy.tools.parser',
'galaxy.tools.toolbox',
'galaxy.tools.toolbox.filters',
'galaxy.tools.toolbox.lineages',
'galaxy.tools.linters',
'galaxy.tools.locations',
'galaxy.tools.deps',
'galaxy.tools.deps.container_resolvers',
'galaxy.tools.deps.mulled',
'galaxy.tools.deps.resolvers',
'galaxy.tools.verify',
'galaxy.tools.verify.asserts',
'galaxy.util', # Incomplete
'galaxy.util.logging',
'galaxy.util.path',
]
ENTRY_POINTS = '''
[console_scripts]
galaxy-tool-test=galaxy.tools.verify.script:main
mulled-build=galaxy.tools.deps.mulled.mulled_build:main
mulled-build-channel=galaxy.tools.deps.mulled.mulled_build_channel:main
mulled-search=galaxy.tools.deps.mulled.mulled_search:main
mulled-build-tool=galaxy.tools.deps.mulled.mulled_build_tool:main
mulled-build-files=galaxy.tools.deps.mulled.mulled_build_files:main
'''
PACKAGE_DATA = {
# Be sure to update MANIFEST.in for source dist.
'galaxy': [
'util/docutils_template.txt',
'exceptions/error_codes.json',
'tools/deps/mulled/invfile.lua',
'tools/deps/resolvers/default_conda_mapping.yml',
],
}
PACKAGE_DIR = {
SOURCE_DIR: SOURCE_DIR,
}
readme = open('README.rst').read()
history = open('HISTORY.rst').read().replace('.. :changelog:', '')
if os.path.exists("requirements.txt"):
requirements = open("requirements.txt").read().split("\n")
else:
# In tox, it will cover them anyway.
requirements = []
test_requirements = [
# TODO: put package test requirements here
]
setup(
name=PROJECT_NAME,
version=version,
description=PROJECT_DESCRIPTION,
long_description=readme + '\n\n' + history,
author=PROJECT_AUTHOR,
author_email=PROJECT_EMAIL,
url=PROJECT_URL,
packages=PACKAGES,
entry_points=ENTRY_POINTS,
package_data=PACKAGE_DATA,
package_dir=PACKAGE_DIR,
include_package_data=True,
install_requires=requirements,
license="AFL",
zip_safe=False,
keywords='galaxy',
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Environment :: Console',
'License :: OSI Approved :: Academic Free License (AFL)',
'Operating System :: POSIX',
'Topic :: Software Development',
'Topic :: Software Development :: Code Generators',
'Topic :: Software Development :: Testing',
'Natural Language :: English',
"Programming Language :: Python :: 2",
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
],
test_suite=TEST_DIR,
tests_require=test_requirements
)