-
Notifications
You must be signed in to change notification settings - Fork 85
/
gen.sh
22 lines (21 loc) · 918 Bytes
/
gen.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
#!/bin/bash
planemo tool_init --id 'seqtk_seq' --name 'Convert to FASTA (seqtk)'
mv seqtk_seq.xml seqtk_seq_v1.xml
planemo tool_init --force \
--id 'seqtk_seq' \
--name 'Convert to FASTA (seqtk)' \
--requirement seqtk@1.0-r68 \
--example_command 'seqtk seq -a 2.fastq > 2.fasta' \
--example_input 2.fastq \
--example_output 2.fasta
mv seqtk_seq.xml seqtk_seq_v2.xml
planemo tool_init --force \
--id 'seqtk_seq' \
--name 'Convert to FASTA (seqtk)' \
--requirement seqtk@1.0-r68 \
--example_command 'seqtk seq -a 2.fastq > 2.fasta' \
--example_input 2.fastq \
--example_output 2.fasta \
--test_case \
--help_from_command 'seqtk seq'
mv seqtk_seq.xml seqtk_seq_v3.xml