Merge pull request #830 from jmchilton/cwl_logging

Better default logging config for CWL development.

planemo/cli.py

@@ -271,6 +271,12 @@ def planemo(ctx, config, directory, verbose, configure_logging=True):
                 },
             },
             'loggers': {
+                # Suppress CWL is beta warning, for Planemo purposes - it is absolutely not.
+                'galaxy.tools.parser.factory': {
+                    'handlers': ['console'],
+                    'propagate': False,
+                    'level': 'ERROR' if not verbose else "DEBUG",
+                },
                 'galaxy.tools.deps.commands': {
                     'handlers': ['console'],
                     'propagate': False,
@@ -281,6 +287,20 @@ def planemo(ctx, config, directory, verbose, configure_logging=True):
                     'propagate': False,
                     'level': 'INFO' if not verbose else "DEBUG",
                 },
+                # @jmchilton
+                # I'm fixing up Planemo's lint functionality for CWL and I keep seeing this for the
+                # schema metadata stuff (e.g. in the workflows repo). "rdflib.term WARNING:
+                # http://schema.org/docs/!DOCTYPE html does not look like a valid URI, trying to
+                # serialize this will break.". I'm going to suppress this warning I think, or are the
+                # examples wrong and should declare their namespaces differently in some way?
+                # @mr-c
+                # That particular warning is worth suppressing. A PR to silence it permanently would be very welcome!
+                # https://github.com/RDFLib/rdflib/blob/master/rdflib/term.py#L225
+                'rdflib.term': {
+                    'handlers': ['console'],
+                    'propagate': False,
+                    'level': 'ERROR' if not verbose else "DEBUG",
+                }
             },
             'root': {
                 'handlers': ['console'],