Add support for Python 3.8

galaxyproject · Nov 1, 2019 · 8a10d91 · 8a10d91
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Showing 13 changed files with 13 additions and 12 deletions.
diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
@@ -106,7 +106,7 @@ Before you submit a pull request, check that it meets these guidelines:
 
 1. If the pull request adds functionality, the docs should be updated. Put
    your new functionality into a function with a docstring.
-2. The pull request should work for Python 2.7 and 3.7. Check
+2. The pull request should work for Python 2.7 and >=3.5. Check
    https://travis-ci.org/galaxyproject/planemo/pull_requests
    and make sure that the tests pass for all supported Python versions.
 

diff --git a/docs/commands/run.rst b/docs/commands/run.rst
@@ -23,7 +23,7 @@ Planemo command for running tools and jobs.
 
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/serve.rst b/docs/commands/serve.rst
@@ -39,7 +39,7 @@ Galaxy instance.
 
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/shed_serve.rst b/docs/commands/shed_serve.rst
@@ -47,7 +47,7 @@ logged into and explored interactively.
                                       mappings defined ~/.planemo.yml.
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/shed_test.rst b/docs/commands/shed_test.rst
@@ -48,7 +48,7 @@ This command requires the target to be version 15.07 or newer.
                                       mappings defined ~/.planemo.yml.
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/test.rst b/docs/commands/test.rst
@@ -55,7 +55,7 @@ please careful and do not try this against production Galaxy instances.
                                       part of testing.)
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/tool_factory.rst b/docs/commands/tool_factory.rst
@@ -24,7 +24,7 @@ http://www.ncbi.nlm.nih.gov/pubmed/23024011.
 
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/training_generate_from_wf.rst b/docs/commands/training_generate_from_wf.rst
@@ -28,7 +28,7 @@ Create tutorial skeleton from workflow.
       --workflow_id TEXT              ID of the workflow on the Galaxy instance
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/training_init.rst b/docs/commands/training_init.rst
@@ -38,7 +38,7 @@ Build training template from workflow.
                                       Zenodo extension and Galaxy datatypes
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/workflow_convert.rst b/docs/commands/workflow_convert.rst
@@ -21,7 +21,7 @@ Convert Format 2 workflow to a native Galaxy workflow.
       -o, --output FILE
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/docs/commands/workflow_edit.rst b/docs/commands/workflow_edit.rst
@@ -19,7 +19,7 @@ Open a synchronized Galaxy workflow editor.
 
       --galaxy_root DIRECTORY         Root of development galaxy directory to
                                       execute command with.
-      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7]
+      --galaxy_python_version [2|2.7|3|3.5|3.6|3.7|3.8]
                                       Python version to start Galaxy under
       --galaxy_database_seed PATH     Preseeded Galaxy sqlite database to target.
       --extra_tools PATH              Extra tool sources to include in Galaxy's tool

diff --git a/planemo/options.py b/planemo/options.py
@@ -134,7 +134,7 @@ def galaxy_python_version():
         '--galaxy_python_version',
         use_global_config=True,
         default=None,
-        type=click.Choice(['2', '2.7', '3', '3.5', '3.6', '3.7']),
+        type=click.Choice(['2', '2.7', '3', '3.5', '3.6', '3.7', '3.8']),
         help="Python version to start Galaxy under",
     )
 

diff --git a/setup.py b/setup.py
@@ -138,6 +138,7 @@ def get_var(var_name):
         'Programming Language :: Python :: 3.5',
         'Programming Language :: Python :: 3.6',
         'Programming Language :: Python :: 3.7',
+        'Programming Language :: Python :: 3.8',
     ],
     test_suite=TEST_DIR,
     tests_require=test_requirements