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Add a native Galaxy workflow (.ga) testing test.
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WorkflowInput1: | ||
class: File | ||
path: hello.txt | ||
WorkflowInput2: | ||
class: File | ||
path: hello.txt |
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- doc: Simple concat workflow test | ||
job: wf2-job.yml | ||
outputs: | ||
wf_output_1: | ||
checksum: "sha1$a0b65939670bc2c010f4d5d6a0b3e4e4590fb92b" |
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{ | ||
"a_galaxy_workflow": "true", | ||
"annotation": "simple workflow", | ||
"format-version": "0.1", | ||
"name": "TestWorkflow1", | ||
"steps": { | ||
"0": { | ||
"annotation": "input1 description", | ||
"id": 0, | ||
"input_connections": {}, | ||
"inputs": [ | ||
{ | ||
"description": "input1 description", | ||
"name": "WorkflowInput1" | ||
} | ||
], | ||
"name": "Input dataset", | ||
"outputs": [], | ||
"position": { | ||
"left": 199.55555772781372, | ||
"top": 200.66666460037231 | ||
}, | ||
"tool_errors": null, | ||
"tool_id": null, | ||
"tool_state": "{\"name\": \"WorkflowInput1\"}", | ||
"tool_version": null, | ||
"type": "data_input", | ||
"user_outputs": [] | ||
}, | ||
"1": { | ||
"annotation": "", | ||
"id": 1, | ||
"input_connections": {}, | ||
"inputs": [ | ||
{ | ||
"description": "", | ||
"name": "WorkflowInput2" | ||
} | ||
], | ||
"name": "Input dataset", | ||
"outputs": [], | ||
"position": { | ||
"left": 206.22221422195435, | ||
"top": 327.33335161209106 | ||
}, | ||
"tool_errors": null, | ||
"tool_id": null, | ||
"tool_state": "{\"name\": \"WorkflowInput2\"}", | ||
"tool_version": null, | ||
"type": "data_input", | ||
"user_outputs": [] | ||
}, | ||
"2": { | ||
"annotation": "", | ||
"id": 2, | ||
"input_connections": { | ||
"input1": { | ||
"id": 0, | ||
"output_name": "output" | ||
}, | ||
"queries_0|input2": { | ||
"id": 1, | ||
"output_name": "output" | ||
} | ||
}, | ||
"inputs": [], | ||
"name": "Concatenate datasets", | ||
"outputs": [ | ||
{ | ||
"name": "out_file1", | ||
"type": "input" | ||
} | ||
], | ||
"position": { | ||
"left": 419.33335876464844, | ||
"top": 200.44446563720703 | ||
}, | ||
"workflow_outputs": [ | ||
{"output_name": "out_file1", "label": "wf_output_1"} | ||
], | ||
"post_job_actions": {}, | ||
"tool_errors": null, | ||
"tool_id": "cat", | ||
"tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"chromInfo\": \"\\\"/home/john/workspace/galaxy-central/tool-data/shared/ucsc/chrom/?.len\\\"\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}]\"}", | ||
"tool_version": "1.0.0", | ||
"type": "tool", | ||
"user_outputs": [] | ||
} | ||
} | ||
} |
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