Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Don't use a Python script in sam_pileup #545

Merged
merged 6 commits into from Feb 6, 2020

Conversation

mvdbeek
Copy link
Member

@mvdbeek mvdbeek commented Feb 5, 2020

No description provided.

@mvdbeek mvdbeek requested a review from nsoranzo February 5, 2020 17:48
tools/sam_pileup/.shed.yml Outdated Show resolved Hide resolved
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
@nsoranzo
Copy link
Member

nsoranzo commented Feb 5, 2020

After spending sometime cleaning up the overlong Python code, I realised this doesn't need to use a Python script at all... I'll work on that later or tomorrow.

@mvdbeek
Copy link
Member Author

mvdbeek commented Feb 5, 2020

It's probably not worth investing too much time though, noone should be using pileup format in 2020 anyway.

@nsoranzo
Copy link
Member

nsoranzo commented Feb 6, 2020

@mvdbeek I got rid of the Python, can you double check the changes?

@mvdbeek
Copy link
Member Author

mvdbeek commented Feb 6, 2020

Looks good, thanks @nsoranzo !

@mvdbeek mvdbeek merged commit 8301d37 into galaxyproject:master Feb 6, 2020
@nsoranzo nsoranzo changed the title Add requirements to sam_pileup.py, fix script Don't use a Python script in sam_pileup Feb 6, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants