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hexylena committed Dec 4, 2020
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19 changes: 9 additions & 10 deletions topics/galaxy-interface/tutorials/intermine/tutorial.md
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# Import data from InterMine

> ### {% icon hands_on %} Hands-on: Import
> 1. Search Galaxy for `InterMine` (not case sensitive; `intermine` is fine too), and click on **InterMine Server** under **Get Data**.
{: .hands_on}


This will redirect you to the InterMine registry, which shows a full list of InterMines and the various organisms they support. Find an InterMine that has the organism type you’re working with, and click on it to redirect to that InterMine.

Once you arrive at your InterMine of choice, you can run a query as normal - this could be a search, a list results page, a template, or a query in the query builder. Eventually you’ll be presented with an InterMine results table.

> ### {% icon hands_on %} Hands-on: Run a query on Intermine
> Search Galaxy for `InterMine` (not case sensitive; `intermine` is fine too), and click on **InterMine Server** under **Get Data**.
>
> 1. {% tool [InterMine Server](intermine) %}
>
> 2. This will redirect you to the InterMine registry, which shows a full list of InterMines and the various organisms they support. Find an InterMine that has the organism type you’re working with, and click on it to redirect to that InterMine.
>
> 3. Once you arrive at your InterMine of choice, you can run a query as normal - this could be a search, a list results page, a template, or a query in the query builder. Eventually you’ll be presented with an InterMine results table.
>
> 4. Click on **Export** (top right). This will bring up a modal window.
> 5. Select **Send to Galaxy** and double-check the *"Galaxy Location"* is correct.
> 6. Click on the **Send to Galaxy** button on the bottom right of the pop-up window.
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> ### {% icon hands_on %} Hands-on: Data upload
>
> 1. Import some fly data from [Zenodo](https://zenodo.org/record/3407174) or from the data librar<>
> 1. Import some fly data from [Zenodo](https://zenodo.org/record/3407174) or from the data library
>
> ```
> https://zenodo.org/record/3407174/files/GenesLocatedOnChromosome4.tsv
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]
}
},
"tags": ["galaxy-data-manipulation"],
"tags": ["galaxy-interface"],
"uuid": "6ce8a0ea-f916-47e6-b0ba-f337d947c7ea",
"version": 1
}

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