fix header parameter in deseq2 workflow

galaxyproject · Apr 15, 2022 · 815b507 · 815b507
1 parent e18306a
commit 815b507
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/topics/transcriptomics/tutorials/ref-based/workflows/deg-analysis.ga b/topics/transcriptomics/tutorials/ref-based/workflows/deg-analysis.ga
@@ -429,7 +429,7 @@
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"__input_ext\": \"tabular\", \"advanced_options\": {\"esf\": \"\", \"fit_type\": \"1\", \"outlier_replace_off\": \"false\", \"outlier_filter_off\": \"false\", \"auto_mean_filter_off\": \"false\"}, \"batch_factors\": null, \"header\": \"true\", \"output_options\": {\"output_selector\": [\"pdf\", \"normCounts\"], \"alpha_ma\": \"0.1\"}, \"select_data\": {\"how\": \"group_tags\", \"__current_case__\": 0, \"countsFile\": null, \"rep_factorName\": [{\"__index__\": 0, \"factorName\": \"Treatment\", \"rep_factorLevel\": [{\"__index__\": 0, \"factorLevel\": \"treated\", \"groups\": [\"treat\"]}, {\"__index__\": 1, \"factorLevel\": \"untreated\", \"groups\": [\"untreat\"]}]}, {\"__index__\": 1, \"factorName\": \"Sequencing\", \"rep_factorLevel\": [{\"__index__\": 0, \"factorLevel\": \"PE\", \"groups\": [\"paired\"]}, {\"__index__\": 1, \"factorLevel\": \"SE\", \"groups\": [\"single\"]}]}]}, \"tximport\": {\"tximport_selector\": \"count\", \"__current_case__\": 1}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"__input_ext\": \"tabular\", \"advanced_options\": {\"esf\": \"\", \"fit_type\": \"1\", \"outlier_replace_off\": \"false\", \"outlier_filter_off\": \"false\", \"auto_mean_filter_off\": \"false\"}, \"batch_factors\": null, \"header\": \"false\", \"output_options\": {\"output_selector\": [\"pdf\", \"normCounts\"], \"alpha_ma\": \"0.1\"}, \"select_data\": {\"how\": \"group_tags\", \"__current_case__\": 0, \"countsFile\": null, \"rep_factorName\": [{\"__index__\": 0, \"factorName\": \"Treatment\", \"rep_factorLevel\": [{\"__index__\": 0, \"factorLevel\": \"treated\", \"groups\": [\"treat\"]}, {\"__index__\": 1, \"factorLevel\": \"untreated\", \"groups\": [\"untreat\"]}]}, {\"__index__\": 1, \"factorName\": \"Sequencing\", \"rep_factorLevel\": [{\"__index__\": 0, \"factorLevel\": \"PE\", \"groups\": [\"paired\"]}, {\"__index__\": 1, \"factorLevel\": \"SE\", \"groups\": [\"single\"]}]}]}, \"tximport\": {\"tximport_selector\": \"count\", \"__current_case__\": 1}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "2.11.40.7+galaxy1",
             "type": "tool",
             "uuid": "45883538-b692-4e35-8dee-d08974682a9c",