Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New Training: Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub #4942

Open
wants to merge 28 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
28 commits
Select commit Hold shift + click to select a range
44c9c2f
adding content to Fair lessons
GabrielaLopez Oct 20, 2023
d402f8f
new items
GabrielaLopez Dec 19, 2023
2c2ad6f
1627 coments
GabrielaLopez Dec 19, 2023
276daee
1643 content
GabrielaLopez Dec 19, 2023
a819328
16:50
GabrielaLopez Dec 19, 2023
54c138a
1655
GabrielaLopez Dec 19, 2023
1840a47
add tutorial.
GabrielaLopez Jan 5, 2024
009d10d
Update tutorial.md
GabrielaLopez May 13, 2024
464c0a6
Update tutorial.md
GabrielaLopez May 13, 2024
07aca8a
Update tutorial.md
GabrielaLopez May 13, 2024
f32752e
Update tutorial.md
GabrielaLopez May 13, 2024
791b97d
Update tutorial.md
GabrielaLopez May 13, 2024
6b39e44
Update tutorial.md
GabrielaLopez May 13, 2024
7d368fc
Update tutorial.md
GabrielaLopez May 13, 2024
56b4d7f
Update tutorial.md
GabrielaLopez May 13, 2024
1a0b163
adding contributors to tutorial.md
kkamieniecka May 13, 2024
e444321
add new authors to CONTRIBUTORS.yaml
kkamieniecka May 13, 2024
1b1c71f
Update tutorial.md
GabrielaLopez May 13, 2024
13eaa1f
Update tutorial.md
GabrielaLopez May 13, 2024
d9b0662
Merge branch 'galaxyproject:main' into DASH-1240
kkamieniecka May 14, 2024
f18f5c2
fix objectives capital letter and remove the introduction hedder
khaled196 May 20, 2024
0d0b7e3
fix linit errors
khaled196 May 20, 2024
0a791aa
Merge pull request #1 from khaled196/patch-1
kkamieniecka May 20, 2024
d23a0f4
fix linit errors
khaled196 May 20, 2024
200de10
Merge pull request #2 from khaled196/patch-1
kkamieniecka May 20, 2024
5e4706c
add tutorial.bib
khaled196 May 21, 2024
28b8b6b
add faqs
khaled196 May 21, 2024
ff2a7bc
Merge pull request #3 from khaled196/patch-1
kkamieniecka May 21, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 14 additions & 0 deletions CONTRIBUTORS.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -625,6 +625,13 @@ ElectronicBlueberry:
- uni-freiburg
- elixir-europe

angiolini:
github: false
name: Emily Angiolini
joined: 2024-05
elixir_node: uk
orcid: 0000-0002-0814-8830

emmaleith:
name: Emma Leith
email: leith023@umn.edu
Expand Down Expand Up @@ -739,6 +746,13 @@ fubar2:
joined: 2021-02
elixir_node: au

GabrielaLopez:
name: Gabriela Lopez-Gonzalez
twitter: GabyBelicosa
orcid: 0000-0002-0814-8830
joined: 2023-01
elixir_node: uk

gallardoalba:
name: Cristóbal Gallardo
joined: 2020-11
Expand Down
3 changes: 3 additions & 0 deletions topics/fair/tutorials/data-management-peatlands/faqs/index.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
---
layout: faq-page
---
13 changes: 13 additions & 0 deletions topics/fair/tutorials/data-management-peatlands/tutorial.bib
Original file line number Diff line number Diff line change
@@ -0,0 +1,13 @@
@article{Wilkinson2016,
title = {The FAIR Guiding Principles for scientific data management and stewardship},
volume = {3},
ISSN = {2052-4463},
url = {http://dx.doi.org/10.1038/sdata.2016.18},
DOI = {10.1038/sdata.2016.18},
number = {1},
journal = {Scientific Data},
publisher = {Springer Science and Business Media LLC},
author = {Wilkinson, Mark D. and Dumontier, Michel and Aalbersberg, IJsbrand Jan and Appleton, Gabrielle and Axton, Myles and Baak, Arie and Blomberg, Niklas and Boiten, Jan-Willem and da Silva Santos, Luiz Bonino and Bourne, Philip E. and Bouwman, Jildau and Brookes, Anthony J. and Clark, Tim and Crosas, Mercè and Dillo, Ingrid and Dumon, Olivier and Edmunds, Scott and Evelo, Chris T. and Finkers, Richard and Gonzalez-Beltran, Alejandra and Gray, Alasdair J.G. and Groth, Paul and Goble, Carole and Grethe, Jeffrey S. and Heringa, Jaap and ’t Hoen, Peter A.C and Hooft, Rob and Kuhn, Tobias and Kok, Ruben and Kok, Joost and Lusher, Scott J. and Martone, Maryann E. and Mons, Albert and Packer, Abel L. and Persson, Bengt and Rocca-Serra, Philippe and Roos, Marco and van Schaik, Rene and Sansone, Susanna-Assunta and Schultes, Erik and Sengstag, Thierry and Slater, Ted and Strawn, George and Swertz, Morris A. and Thompson, Mark and van der Lei, Johan and van Mulligen, Erik and Velterop, Jan and Waagmeester, Andra and Wittenburg, Peter and Wolstencroft, Katherine and Zhao, Jun and Mons, Barend},
year = {2016},
month = mar
}
113 changes: 113 additions & 0 deletions topics/fair/tutorials/data-management-peatlands/tutorial.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,113 @@
---
layout: tutorial_hands_on
title: Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub
level: Introductory
abbreviations:
DMP: Data Management Plan
FAIR: Findable, Accessible, Interoperable, Reusable
zenodo_link: ''
questions:
- Why create a DMP for peatland research?
- How to apply FAIR data management solutions for peatland research?
objectives:
- Understand the importance of data management in peatland research.
- Learn how to create a data management plan (DMP) for peatland research
- Create a first draft of a data management plan for peatland research
time_estimation: "30M"
key_points:
- A Data Management Plan (DMP) is a live document that provides a framework for managing data material during and after the research project.
- FAIR data are data which meet principles of findability, accessibility, interoperability, and reusability (FAIR).

tags:
- fair
- open
- data management plan
priority: 1
contributions:
authorship:
- GabrielaLopez
- kkamieniecka
- robertmand
- angiolini
- poterlowicz-lab
editing:
- hexylena
subtopic: fair-data

---


Peatland monitoring and research generates data that is used for management, conservation and policy related to these ecosystems. To ensure that your project data is collected systematically and can be analysed, shared, and re-used it is important to have a data management plan.

This tutorial is a short introduction to writing a Data Management Plan (DMP) with examples for peatland monitoring projects and initiatives.

You can find more information on DMPs in the [Research Data Management Toolkit for Life Sciences]( https://rdmkit.elixir-europe.org/)

> <agenda-title></agenda-title>
>
> In this tutorial we will cover:
>
> 1. TOC
> {:toc}
>
{: .agenda}

# What is a Data Management Plan?

A Data Management Plan (DMP) is a live document that provides a framework for managing data material during and after the research project.

A data management plan will facilitate the process of collecting and managing your peatland data and will allow you to discuss with your team how to share data, considering the requirements of your organisation and funders.

# Key components of a DMP
DMP templates vary by institution and funding agencies.

| DMP component | What to include|
| ------------- | ------------- |
| Descriptions of the data | &bull; Project details <br> &bull; Types of data <br> collected and generated <br> &bull; Origin of data <br> &bull; Format and size of data |
|Data collection/generation | &bull; Data collection methods <br> &bull; Data quality standards|
|Data management, documentation, and curation | &bull; Storage and accessibility <br> &bull; Metadata standards and documentation <br> &bull; Curation and preservation |
|Data sharing and access | &bull; Where the data will be shared <br> &bull; When will the data be available |
|Data security (where relevant)|&bull; Risks to data security<br> &bull; GDPR considerations|
|Capabilities| &bull; Evaluation of institutional capabilities to preserve and manage data|
|Maintaining and implementing the Data Management Plan|&bull; Actions to maintain and deliver the DMP |
|Environmental considerations|&bull; Energy cost considerations related to data management|
|Responsibilities|&bull; Agreement on the responsibilities of named individuals for data management|
|Relevant institutional, departmental or study policies on data sharing and data security| &bull; Review of institutional policies for data management|

## Hands-on: Create a DMP for peatland research
* Download the DMP template for [Peatland Research and Monitoring](https://zenodo.org/records/11185774).
* Fill in the DMP template using the prompt questions.
* Review your DMP with your team and collaborators.
Comment on lines +77 to +80
Copy link
Member

@hexylena hexylena May 22, 2024

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Would it be possible to include a completed example of the form here? I find I often struggle with that with FAIR things, where the templates are great but I don't know what a real output looks like

Copy link
Collaborator Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Hi Helena, sorry I've missed your comment. We will add an example and attach supplementary video after workshop on Thursday.

Copy link
Collaborator Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@hexylena @shiltemann Hi both, sorry to bother you can we merge it this way now so we can update after workshop and still distribute the lesson URL? Thank you!


# FAIR data management solutions

After you have filled in the DMP template, review how you can make your DMP FAIR.

There are several ways to set up FAIR (Findable, Accessible, Interoperable, Reusable) data management plans (DMPs)

* Findable (F): Data description and collection or reuse of existing data. Using metadata and community recognised standards for curation that enable someone to find the data.
* Accessible (A): Standardised authentication or authorisation (e.g. HTTP, HTTPS) for open and restricted data access.
* Interoperable (I): Documentation and data quality, and community standards for data exchange (e.g. tab-delimited text).
* Reusable (R): Storage and backup supported by legal and ethical requirements, as well as data release policies.

More information is available in the [FAIR data management tutorial]({% link topics/fair/tutorials/data-management/tutorial.md %})

# Conclusion

Creating a DMP will allow you and your institution to make the most of your peatland data. This introduction to DMP aims to highlight the usefulness of data management for peatland research and monitoring.



## Suggested reading
* [FAIR in a nutshell]({% link topics/fair/tutorials/fair-intro/tutorial.md %})
* [The published FAIR Guiding Principles: Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016)]({% cite Wilkinson2016 %})
* [Recipes for data FAIRification, written by domain experts giving real-world examples: FAIR Cookbook](https://faircookbook.elixir-europe.org/content/home.html)
* [Documentation and frameworks for data FAIRification. Each of the 15 FAIR principles is put into context with real data examples: GO FAIR](https://www.go-fair.org/fair-principles)
* [FAIR walkthrough using examples from across all academic disciplines: How to FAIR](https://howtofair.dk/)

## Resources
* [How to write a data-sharing agreement between collaborators](https://www.youtube.com/watch?v=iaZInoaHa04)
* [DMP online](https://dmponline.dcc.ac.uk)
* [DSWizard](https://bio.tools/tool/Data_Stewardship_Wizard)
* [WaterLands](https://waterlands.eu/)
* [PeatDataHub](https://peatdatahub.net/)
Loading