Updated RNAStar on test and main to version 2.6.0b

galaxyproject · Jun 11, 2018 · 1b5edc4 · 1b5edc4
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diff --git a/env/main/files/galaxy/var/integrated_tool_panel.xml b/env/main/files/galaxy/var/integrated_tool_panel.xml
@@ -713,6 +713,8 @@
 
     <section id="ngs-rna-tools" name="NGS: RNA Analysis" version="">
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.0.3" />

diff --git a/env/main/files/galaxy/var/shed_tool_conf.xml b/env/main/files/galaxy/var/shed_tool_conf.xml
@@ -15310,4 +15310,15 @@
     </tool>
 </section>
 
+<section id="ngs-rna-tools" name="NGS: RNA Analysis" version="">
+  <tool file="toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/d5659efd66aa/rgrnastar/rg_rnaStar.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>rgrnastar</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>d5659efd66aa</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1</id>
+        <version>2.6.0b-1</version>
+    </tool>
+</section>
+
 </toolbox>
diff --git a/env/main/files/galaxy/var/shed_tool_data_table_conf.xml b/env/main/files/galaxy/var/shed_tool_data_table_conf.xml
@@ -13020,4 +13020,14 @@
             <installed_changeset_revision>17062a0decb7</installed_changeset_revision>
             </tool_shed_repository>
     </table>
+<table allow_duplicate_entries="False" comment_char="#" name="rnastar_index2">
+        <columns>value, dbkey, name, path, with-gtf</columns>
+        <file path="/cvmfs/main.galaxyproject.org/tool_data/toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/d5659efd66aa/rnastar_index2.loc" />
+        <tool_shed_repository>
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>rgrnastar</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>d5659efd66aa</installed_changeset_revision>
+            </tool_shed_repository>
+    </table>
 </tables>
diff --git a/env/test/files/galaxy/var/integrated_tool_panel.xml b/env/test/files/galaxy/var/integrated_tool_panel.xml
@@ -683,6 +683,8 @@
 
     <section id="ngs-rna-tools" name="NGS: RNA Analysis" version="">
 
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1" />
+
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0" />
 
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.24.0.0" />

diff --git a/env/test/files/galaxy/var/shed_tool_conf.xml b/env/test/files/galaxy/var/shed_tool_conf.xml
@@ -8448,4 +8448,15 @@
     </tool>
 </section>
 
+<section id="ngs-rna-tools" name="NGS: RNA Analysis" version="">
+  <tool file="toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/d5659efd66aa/rgrnastar/rg_rnaStar.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>rgrnastar</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>d5659efd66aa</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-1</id>
+        <version>2.6.0b-1</version>
+    </tool>
+</section>
+
 </toolbox>