Update TRANSIT tools on test, add GFF3 to prot_table converter.

galaxyproject · Feb 27, 2019 · 1e95e6f · 1e95e6f
1 parent 229869c
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diff --git a/env/test/files/galaxy/var/integrated_tool_panel.xml b/env/test/files/galaxy/var/integrated_tool_panel.xml
@@ -2323,6 +2323,14 @@
 
     <section id="transit" name="Transit" version="">
 
+        <tool id="testtoolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/gff_to_prot/1.0.0" />
+
+        <tool id="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/2.3.1+galaxy1" />
+
+        <tool id="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_hmm/transit_hmm/2.3.1+galaxy1" />
+
+        <tool id="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_gumbel/transit_gumbel/2.3.1+galaxy1" />
+
         <tool id="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/2.3.1+galaxy0" />
 
         <tool id="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_hmm/transit_hmm/2.3.1+galaxy0" />

diff --git a/env/test/files/galaxy/var/shed_tool_conf.xml b/env/test/files/galaxy/var/shed_tool_conf.xml
@@ -8201,4 +8201,44 @@
             <version>1.2.0</version>
         </tool>
     </section>
+    <section id="transit" name="Transit" version="">
+        <tool file="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_gumbel/5c08dadad774/transit_gumbel/transit_gumbel.xml" guid="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_gumbel/transit_gumbel/2.3.1+galaxy1">
+            <tool_shed>testtoolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>transit_gumbel</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>5c08dadad774</installed_changeset_revision>
+            <id>testtoolshed.g2.bx.psu.edu/repos/iuc/transit_gumbel/transit_gumbel/2.3.1+galaxy1</id>
+            <version>2.3.1+galaxy1</version>
+        </tool>
+    </section>
+    <section id="transit" name="Transit" version="">
+        <tool file="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_hmm/46e37fd330e8/transit_hmm/transit_hmm.xml" guid="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_hmm/transit_hmm/2.3.1+galaxy1">
+            <tool_shed>testtoolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>transit_hmm</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>46e37fd330e8</installed_changeset_revision>
+            <id>testtoolshed.g2.bx.psu.edu/repos/iuc/transit_hmm/transit_hmm/2.3.1+galaxy1</id>
+            <version>2.3.1+galaxy1</version>
+        </tool>
+    </section>
+    <section id="transit" name="Transit" version="">
+        <tool file="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/1d1ca6b30fbb/transit_resampling/transit_resampling.xml" guid="testtoolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/2.3.1+galaxy1">
+            <tool_shed>testtoolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>transit_resampling</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>1d1ca6b30fbb</installed_changeset_revision>
+            <id>testtoolshed.g2.bx.psu.edu/repos/iuc/transit_resampling/transit_resampling/2.3.1+galaxy1</id>
+            <version>2.3.1+galaxy1</version>
+        </tool>
+    </section>
+    <section id="transit" name="Transit" version="">
+        <tool file="testtoolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/f6c407e41a33/gff_to_prot/convert_gff.xml" guid="testtoolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/gff_to_prot/1.0.0">
+            <tool_shed>testtoolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>gff_to_prot</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>f6c407e41a33</installed_changeset_revision>
+            <id>testtoolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/gff_to_prot/1.0.0</id>
+            <version>1.0.0</version>
+        </tool>
+    </section>
 </toolbox>