Updated snpeff_build to 4.3+T.galaxy2

galaxyproject · Apr 9, 2018 · 4b2bf17 · 4b2bf17
1 parent 0d77bf1
commit 4b2bf17
Show file tree

Hide file tree

Showing 3 changed files with 56 additions and 0 deletions.
diff --git a/env/main/files/galaxy/var/integrated_tool_panel.xml b/env/main/files/galaxy/var/integrated_tool_panel.xml
@@ -646,6 +646,7 @@
     <section id="variant_detection" name="NGS: Variant Analysis" version="">
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy1" />
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy1" />
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy2" />
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy1" />
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1" />
         <tool id="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3.1t.1" />

diff --git a/env/main/files/galaxy/var/shed_tool_conf.xml b/env/main/files/galaxy/var/shed_tool_conf.xml
@@ -15002,4 +15002,39 @@
     </tool>
 </section>
 
+<section id="variant_detection" name="NGS: Variant Analysis" version="">
+  <tool file="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/f0ee2b470481/snpeff/snpEff_download.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy1">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>snpeff</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>f0ee2b470481</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy1</id>
+        <version>4.3+T.galaxy1</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/f0ee2b470481/snpeff/snpEff_databases.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy1">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>snpeff</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>f0ee2b470481</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy1</id>
+        <version>4.3+T.galaxy1</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/f0ee2b470481/snpeff/snpEff_create_db.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy2">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>snpeff</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>f0ee2b470481</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy2</id>
+        <version>4.3+T.galaxy2</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/f0ee2b470481/snpeff/snpEff.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>snpeff</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>f0ee2b470481</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1</id>
+        <version>4.3+T.galaxy1</version>
+    </tool>
+</section>
+
 </toolbox>
diff --git a/env/main/files/galaxy/var/shed_tool_data_table_conf.xml b/env/main/files/galaxy/var/shed_tool_data_table_conf.xml
@@ -12750,4 +12750,24 @@
             <installed_changeset_revision>5a29ab10dba6</installed_changeset_revision>
             </tool_shed_repository>
     </table>
+<table allow_duplicate_entries="False" comment_char="#" name="snpeffv_genomedb">
+        <columns>key, version, value, name, path</columns>
+        <file path="/cvmfs/main.galaxyproject.org/tool_data/toolshed.g2.bx.psu.edu/repos/iuc/snpeff/f0ee2b470481/snpeffv_genomedb.loc" />
+        <tool_shed_repository>
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>snpeff</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>f0ee2b470481</installed_changeset_revision>
+            </tool_shed_repository>
+    </table>
+<table allow_duplicate_entries="False" comment_char="#" name="snpeffv_regulationdb">
+        <columns>key, version, genome, value, name</columns>
+        <file path="/cvmfs/main.galaxyproject.org/tool_data/toolshed.g2.bx.psu.edu/repos/iuc/snpeff/f0ee2b470481/snpeffv_regulationdb.loc" />
+        <tool_shed_repository>
+            <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+            <repository_name>snpeff</repository_name>
+            <repository_owner>iuc</repository_owner>
+            <installed_changeset_revision>f0ee2b470481</installed_changeset_revision>
+            </tool_shed_repository>
+    </table>
 </tables>