Update main mutable configs for bcf tools installation

galaxyproject · Dec 18, 2018 · 9494e6e · 9494e6e
1 parent de7ba90
commit 9494e6e
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diff --git a/env/main/files/galaxy/var/integrated_tool_panel.xml b/env/main/files/galaxy/var/integrated_tool_panel.xml
@@ -4147,4 +4147,66 @@
 
     </section>
 
+    <section id="bcf_tools" name="BCF Tools" version="">
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_tag2tag/bcftools_plugin_tag2tag/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_query/bcftools_query/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_dosage/bcftools_plugin_dosage/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_csq/bcftools_csq/1.4.0.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_view/bcftools_view/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.4.0.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_merge/bcftools_merge/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_fill_tags/bcftools_plugin_fill_tags/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_fill_an_ac/bcftools_plugin_fill_an_ac/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_stats/bcftools_stats/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_impute_info/bcftools_plugin_impute_info/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_from_vcf/bcftools_convert_from_vcf/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_concat/bcftools_concat/1.4.0.1" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_mendelian/bcftools_plugin_mendelian/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_mpileup/bcftools_mpileup/1.4.0.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_counts/bcftools_plugin_counts/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_setgt/bcftools_plugin_setgt/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.4.0.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_missing2ref/bcftools_plugin_missing2ref/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_query_list_samples/bcftools_query_list_samples/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.4.0.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_fixploidy/bcftools_plugin_fixploidy/1.4.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/bcftools_gtcheck/bcftools_gtcheck/1.4.0.0" />
+
+    </section>
+
 </toolbox>