Install Seqtk 1.2

galaxyproject · Jun 29, 2018 · bd52ea9 · bd52ea9
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diff --git a/env/main/files/galaxy/var/integrated_tool_panel.xml b/env/main/files/galaxy/var/integrated_tool_panel.xml
@@ -3699,6 +3699,38 @@
 
     </section>
 
+    <section id="ngs:_seqtk" name="NGS: Seqtk" version="">
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_hety/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_cutN/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_sample/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_randbase/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_listhet/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.2.2" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mutfa/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_dropse/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_fqchk/1.2.0" />
+
+        <tool id="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.2.0" />
+
+    </section>
+
     <label id="deprecated" text="DEPRECATED" version="" />
 
     <section id="gatk" name="NGS: GATK Tools (beta)" version="">

diff --git a/env/main/files/galaxy/var/shed_tool_conf.xml b/env/main/files/galaxy/var/shed_tool_conf.xml
@@ -15849,4 +15849,119 @@
     </tool>
 </section>
 
+<section id="ngs:_seqtk" name="NGS: Seqtk" version="">
+  <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_hety.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_hety/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_hety/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_cutN.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_cutN/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_cutN/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_trimfq.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_sample.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_sample/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_sample/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_mergefa.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_randbase.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_randbase/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_randbase/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_listhet.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_listhet/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_listhet/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_seq.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.2.2">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.2.2</id>
+        <version>1.2.2</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_subseq.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_mutfa.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mutfa/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mutfa/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_dropse.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_dropse/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_dropse/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_comp.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_fqchk.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_fqchk/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_fqchk/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+    <tool file="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/bc7d99f46a5d/seqtk/seqtk_mergepe.xml" guid="toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>seqtk</repository_name>
+        <repository_owner>iuc</repository_owner>
+        <installed_changeset_revision>bc7d99f46a5d</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.2.0</id>
+        <version>1.2.0</version>
+    </tool>
+</section>
+
 </toolbox>