Run fastx collapse on Jetstream @ IU

env/main/host_vars/jetstream-iu0.galaxyproject.org.yml

@@ -1,6 +1,12 @@
 ---
 
+# FIXME: we don't use this but it has to be set
 shared_root: /srv/pulsar
+
+pulsar_root: /srv/pulsar/main
+# do you need this?
+galaxy_root: /cvmfs/main.galaxyproject.org/galaxy
+
 galaxy_user: g2main
 
 pulsar_drmaa_library_path: "/usr/lib64/libdrmaa.so"

env/main/templates/galaxy/config/job_conf.xml.j2

@@ -68,6 +68,9 @@
         <expand macro="jetstream_destination" id="multi" site="tacc" native_specification="--partition=multi --nodes=1 --time=36:00:00" />
         <expand macro="jetstream_nagios_destination" site="tacc" />
 
+        <!-- test jetstream autoscaling -->
+        <expand macro="jetstream_destination" id="small" site="iu" native_specification="--partition=small --time=36:00:00" />
+
         <!-- stampede destinations -->
         <expand macro="stampede_destination" id="normal" native_specification="--partition=normal --nodes=1 --ntasks=16 --time=48:00:00 --account=TG-MCB140147" />
         <expand macro="stampede_destination" id="development" native_specification="--partition=development --nodes=1 --ntasks=16 --time=00:30:00 --account=TG-MCB140147" />
@@ -160,6 +163,8 @@
         <!-- 64GB tools -->
         <tool id="wig_to_bigWig" destination="dynamic_normal_64gb_reserved"/>
         <tool id="CONVERTER_bedgraph_to_bigwig" destination="dynamic_normal_64gb_reserved"/>
+        <!-- jetstream autoscale test -->
+        <tool id="toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.1" destination="jetstream_iu_small" handler="multi_handlers" />
         <!-- nagios checks -->
         <!-- run wherever it lands
         <tool id="echo_main_cluster"/>