Add Dockerfiles for galaxy-update and galaxy-installer. Note galaxy.i…

…ni not included.
galaxyproject · Mar 20, 2017 · d37d808 · d37d808
1 parent 5f63e39
commit d37d808
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diff --git a/common/docker/galaxy-installer/Dockerfile.main b/common/docker/galaxy-installer/Dockerfile.main
@@ -0,0 +1,26 @@
+# For updating Galaxy
+
+FROM galaxy/update
+
+RUN yum install -y mercurial
+RUN yum clean all
+
+VOLUME /cvmfs
+
+ENV GALAXY_INSTANCE main
+
+RUN mkdir -p /galaxy-repl/${GALAXY_INSTANCE}
+RUN ln -s /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/migrated_tools /galaxy-repl/${GALAXY_INSTANCE}/migrated_tools
+RUN ln -s /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/shed_tools /galaxy-repl/${GALAXY_INSTANCE}/shed_tools
+RUN ln -s /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/deps /galaxy-repl/${GALAXY_INSTANCE}/deps
+RUN ln -s /galaxy-repl /galaxy
+
+RUN mkdir -p /srv/galaxy/${GALAXY_INSTANCE}/var
+RUN chown g2${GALAXY_INSTANCE}:803372 /srv/galaxy/${GALAXY_INSTANCE}/var
+
+EXPOSE 8888
+
+COPY run_main.sh /run.sh
+COPY galaxy_main.ini /srv/galaxy/main/config/galaxy.ini
+
+ENTRYPOINT ["su", "-", "g2main", "-c", "/bin/sh /run.sh"]
diff --git a/common/docker/galaxy-installer/Dockerfile.test b/common/docker/galaxy-installer/Dockerfile.test
@@ -0,0 +1,26 @@
+# For updating Galaxy
+
+FROM galaxy/update
+
+RUN yum install -y mercurial
+RUN yum clean all
+
+VOLUME /cvmfs
+
+ENV GALAXY_INSTANCE test
+
+RUN mkdir -p /galaxy-repl/${GALAXY_INSTANCE}
+RUN ln -s /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/migrated_tools /galaxy-repl/${GALAXY_INSTANCE}/migrated_tools
+RUN ln -s /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/shed_tools /galaxy-repl/${GALAXY_INSTANCE}/shed_tools
+RUN ln -s /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/deps /galaxy-repl/${GALAXY_INSTANCE}/deps
+RUN ln -s /galaxy-repl /galaxy
+
+RUN mkdir -p /srv/galaxy/${GALAXY_INSTANCE}/var
+RUN chown g2${GALAXY_INSTANCE}:803372 /srv/galaxy/${GALAXY_INSTANCE}/var
+
+EXPOSE 8888
+
+COPY run_test.sh /run.sh
+COPY galaxy_test.ini /srv/galaxy/test/config/galaxy.ini
+
+ENTRYPOINT ["su", "-", "g2test", "-c", "/bin/sh /run.sh"]
diff --git a/common/docker/galaxy-installer/run_main.sh b/common/docker/galaxy-installer/run_main.sh
@@ -0,0 +1,7 @@
+#!/bin/sh
+
+GALAXY_INSTANCE=main
+
+. /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/venv/bin/activate
+cd /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/galaxy
+python ./scripts/paster.py serve /srv/galaxy/${GALAXY_INSTANCE}/config/galaxy.ini --server-name=${GALAXY_INSTANCE}_installer
diff --git a/common/docker/galaxy-installer/run_test.sh b/common/docker/galaxy-installer/run_test.sh
@@ -0,0 +1,7 @@
+#!/bin/sh
+
+GALAXY_INSTANCE=test
+
+. /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/venv/bin/activate
+cd /cvmfs/${GALAXY_INSTANCE}.galaxyproject.org/galaxy
+python ./scripts/paster.py serve /srv/galaxy/${GALAXY_INSTANCE}/config/galaxy.ini --server-name=${GALAXY_INSTANCE}_installer
diff --git a/common/docker/galaxy-update/Dockerfile b/common/docker/galaxy-update/Dockerfile
@@ -0,0 +1,17 @@
+# For updating Galaxy
+
+FROM centos:6
+
+MAINTAINER The Galaxy Project http://galaxyproject.org/
+
+RUN yum groupinstall -y 'development tools'
+RUN yum install -y git
+RUN yum clean all
+RUN groupadd -g 803372 G-803372
+RUN useradd -u 819456 -c 'Galaxy Test' -g 803372 -d /home/g2test -s /bin/bash -m g2test
+RUN useradd -u 819800 -c 'Galaxy Main' -g 803372 -d /home/g2main -s /bin/bash -m g2main
+
+COPY condarc /home/g2test/.condarc
+RUN chown g2test:803372 /home/g2test/.condarc
+COPY condarc /home/g2main/.condarc
+RUN chown g2main:803372 /home/g2main/.condarc
diff --git a/common/docker/galaxy-update/condarc b/common/docker/galaxy-update/condarc
@@ -0,0 +1 @@
+always_softlink: True